Citation Impact
Citing Papers
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
Evolutionary limits to cooperation in microbial communities
2014
Inferring interaction partners from protein sequences
2016
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
2013 StandoutNobel
Zero‐shot mutation effect prediction on protein stability and function using RoseTTAFold
2023 StandoutNobel
Highly optimized simulations on single- and multi-GPU systems of the 3D Ising spin glass model
2015 StandoutNobel
Gravitational Radiation from Post-Newtonian Sources and Inspiralling Compact Binaries
2014 Standout
Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding
2020
Hydrodynamics of soft active matter
2013 Standout
Mechanisms of SARS-CoV-2 entry into cells
2021 Standout
The backtracking survey propagation algorithm for solving random K-SAT problems
2016 StandoutNobel
cAb-Rep: A Database of Curated Antibody Repertoires for Exploring Antibody Diversity and Predicting Antibody Prevalence
2019
Big behavioral data: psychology, ethology and the foundations of neuroscience
2014
DeepLabCut: markerless pose estimation of user-defined body parts with deep learning
2018 Standout
Hydrophobic mismatch drives self-organization of designer proteins into synthetic membranes
2024 StandoutNobel
The evolving landscape of biomarkers for checkpoint inhibitor immunotherapy
2019 Standout
Approaches to treat immune hot, altered and cold tumours with combination immunotherapies
2019 Standout
Methods and Applications of CRISPR-Mediated Base Editing in Eukaryotic Genomes
2017
Quorum sensing signal–response systems in Gram-negative bacteria
2016 Standout
Exhaustive enumeration unveils clustering and freezing in the random 3-satisfiability problem
2008
Complete mapping of viral escape from neutralizing antibodies
2017
Biofilms: an emergent form of bacterial life
2016 Standout
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
2011 Standout
Phase transitions in the coloring of random graphs
2007
Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
2020 Standout
Protein design and variant prediction using autoregressive generative models
2021
Solutions to the Public Goods Dilemma in Bacterial Biofilms
2013
SARS-CoV-2 variants, spike mutations and immune escape
2021 Standout
RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures
2016
Elfin: An algorithm for the computational design of custom three-dimensional structures from modular repeat protein building blocks
2017 StandoutNobel
Critical Casimir Forces in Cellular Membranes
2012
Protein 3D Structure Computed from Evolutionary Sequence Variation
2011
Catastrophic cascade of failures in interdependent networks
2010 StandoutNature
A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy
2017 Nature
Responding to chemical gradients: bacterial chemotaxis
2011
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Behavior of heuristics on large and hard satisfiability problems
2006
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
Spatially balanced topological interaction grants optimal cohesion in flocking models
2012 StandoutNobel
Pfam: The protein families database in 2021
2020 Standout
Critical behavior of theX Y
2013
The transition between the niche and neutral regimes in ecology
2014
Buckling deformation of polymer electrolyte membrane and membrane electrode assembly under humidity cycles
2012
Active Particles in Complex and Crowded Environments
2016 Standout
Enhanced SARS-CoV-2 neutralization by dimeric IgA
2020 StandoutNobel
The Pfam protein families database in 2019
2018 Standout
Rapid eccentricity oscillations and the mergers of compact objects in hierarchical triples
2014
The large deviations of the whitening process in random constraint satisfaction problems
2016
Deep generative models for T cell receptor protein sequences
2019
On the Freezing of Variables in Random Constraint Satisfaction Problems
2007
New Insights into Perfluorinated Sulfonic-Acid Ionomers
2017 Standout
Mean-field theory of hard sphere glasses and jamming
2010 StandoutNobel
Finite-size corrections to disordered systems on Erdös-Rényi random graphs
2013 StandoutNobel
A new look at survey propagation and its generalizations
2007
On the solution‐space geometry of random constraint satisfaction problems
2010
One contact for every twelve residues allows robust and accurate topology‐level protein structure modeling
2013 StandoutNobel
Clusters of solutions and replica symmetry breaking in randomk-satisfiability
2008
Critical phenomena in complex networks
2008
Universal spectrum of normal modes in low-temperature glasses
2015 StandoutNobel
Active Brownian particles
2012
Gibbs states and the set of solutions of random constraint satisfaction problems
2007
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
2014 StandoutNobel
Synchronization in complex networks of phase oscillators: A survey
2014 Standout
A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes
2022 StandoutScienceNobel
Long-range random-field Ising model: Phase transition threshold and equivalence of short and long ranges
2013 StandoutNobel
Mechanisms of Competition in Biofilm Communities
2015
Epidemic processes in complex networks
2015 Standout
How to Represent Part-Whole Hierarchies in a Neural Network
2022 StandoutNobel
Merging binaries in the Galactic Center: the eccentric Kozai–Lidov mechanism with stellar evolution
2016 StandoutNobel
Hierarchical model of natural images and the origin of scale invariance
2013
Synchronization in complex networks
2008 Standout
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
2017 Standout
The ecology of the microbiome: Networks, competition, and stability
2015 StandoutScience
Large-scale determination of previously unsolved protein structures using evolutionary information
2015 StandoutNobel
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
Impact of jamming criticality on low-temperature anomalies in structural glasses
2019 StandoutNobel
Cancer immunotherapy using checkpoint blockade
2018 StandoutScience
On the solution-space geometry of random constraint satisfaction problems
2006
Modified gravity and cosmology
2012 Standout
Universal critical behavior of the two-dimensional Ising spin glass
2016 StandoutNobel
Information, Physics, and Computation
2009
How we are leading a 3-XORSAT challenge: From the energy landscape to the algorithm and its efficient implementation on GPUs (a)
2021 StandoutNobel
Protein contact prediction using metagenome sequence data and residual neural networks
2019 StandoutNobel
Works of Thierry Mora being referenced
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
2019
Inferring processes underlying B-cell repertoire diversity
2015
Quantifying selection in immune receptor repertoires
2014
Pairs of SAT Assignments and Clustering in Random Boolean Formulae
2005
Method for identification of condition-associated public antigen receptor sequences
2018
Buckling of swelling gels
2006
Non-genetic individuality inEscherichia colimotor switching
2011
Statistical Thermodynamics of Natural Images
2013
Capturing coevolutionary signals inrepeat proteins
2015
Detecting T cell receptors involved in immune responses from single repertoire snapshots
2019
Clustering of Solutions in the Random Satisfiability Problem
2005
High-throughput immune repertoire analysis with IGoR
2018
Constraint satisfaction problems and neural networks: A statistical physics perspective
2009
Are Biological Systems Poised at Criticality?
2011
Pairs of SAT-assignments in random Boolean formulæ
2008
Statistical inference of the generation probability of T-cell receptors from sequence repertoires
2012
Geometrical organization of solutions to random linear Boolean equations
2006
Maximum entropy models for antibody diversity
2010
Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins
2018
Social interactions dominate speed control in poising natural flocks near criticality
2014
Statistical mechanics for natural flocks of birds
2012
Cell–cell contacts confine public goods diffusion inside Pseudomonas aeruginosa clonal microcolonies
2013
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves
2016
Post-Newtonian diagnostic of quasiequilibrium binary configurations of compact objects
2004