Citation Impact
Citing Papers
Potent CRISPR-Cas9 inhibitors from Staphylococcus genomes
2020 StandoutNobel
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Crystal Structure of a Self-Spliced Group II Intron
2008 Science
Physically realistic homology models built with rosetta can be more accurate than their templates
2006 StandoutNobel
Machine learning predicts new anti-CRISPR proteins
2020 StandoutNobel
The 2.6 Angstrom Crystal Structure of a Human A 2A Adenosine Receptor Bound to an Antagonist
2008 StandoutScience
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Improved gRNA secondary structures allow editing of target sites resistant to CRISPR-Cas9 cleavage
2022 StandoutNobel
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
The promise and challenge of therapeutic genome editing
2020 StandoutNatureNobel
Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants
2016
A single active-site region for a group II intron
2005
The group II intron ribonucleoprotein precursor is a large, loosely packed structure
2010 StandoutNobel
CRISPR/Cas9 genome editing in human hematopoietic stem cells
2018
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
C2H2 zinc finger proteins greatly expand the human regulatory lexicon
2015
A new progressive-iterative algorithm for multiple structure alignment
2005
Prediction of CASP6 structures using automated robetta protocols
2005 StandoutNobel
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
Refining homology models by combining replica‐exchange molecular dynamics and statistical potentials
2008
The Spliceosome: Design Principles of a Dynamic RNP Machine
2009 Standout
Methods and Applications of CRISPR-Mediated Base Editing in Eukaryotic Genomes
2017
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
2015 Standout
Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods
2017
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
All are not equal: A benchmark of different homology modeling programs
2005
ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants
2013
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
The Human Transcription Factors
2018 Standout
A high-fidelity Cas9 mutant delivered as a ribonucleoprotein complex enables efficient gene editing in human hematopoietic stem and progenitor cells
2018
Protein Structure Prediction: Inroads to Biology
2005
Marker-free coselection for CRISPR-driven genome editing in human cells
2017
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
2017 StandoutNature
Template-based structure modeling of protein–protein interactions
2013
Mechanism of tetracycline resistance by ribosomal protection protein Tet(O)
2013 StandoutNobel
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Structures of Human Exonuclease 1 DNA Complexes Suggest a Unified Mechanism for Nuclease Family
2011 StandoutNobel
A Broad-Spectrum Inhibitor of CRISPR-Cas9
2017 StandoutNobel
PlantGSEA: a gene set enrichment analysis toolkit for plant community
2013
The tertiary structure of group II introns: implications for biological function and evolution
2010
CRISPR–Cas9 genome editing induces a p53-mediated DNA damage response
2018
Search-and-replace genome editing without double-strand breaks or donor DNA
2019 StandoutNature
Meeting the Global Food Demand of the Future by Engineering Crop Photosynthesis and Yield Potential
2015 Standout
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Molecular modeling of A1and A2Aadenosine receptors: Comparison of rhodopsin‐ and β2‐adrenergic‐based homology models through the docking studies
2008
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
Improvement of the Threespine Stickleback Genome Using a Hi-C-Based Proximity-Guided Assembly
2017
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Improving the DNA specificity and applicability of base editing through protein engineering and protein delivery
2017
Evolutionary Profiles Derived from the QR Factorization of Multiple Structural Alignments Gives an Economy of Information
2004
Cornerstones of CRISPR–Cas in drug discovery and therapy
2016 StandoutNobel
A beginner's guide to eukaryotic genome annotation
2012
Protein Sequence Editing of SKN-1A/Nrf1 by Peptide:N-Glycanase Controls Proteasome Gene Expression
2019 StandoutNobel
High‐quality homology models derived from NMR and X‐ray structures of E. coli proteins YgdK and Suf E suggest that all members of the YgdK/Suf E protein family are enhancers of cysteine desulfurases
2005
A Three-Dimensional Model of a Group II Intron RNA and Its Interaction with the Intron-Encoded Reverse Transcriptase
2008
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
2013
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
2013
Field Guide to Plant Model Systems
2016
Group II Introns: Mobile Ribozymes that Invade DNA
2010
Visualization of a group II intron in the 23S rRNA of a stable ribosome
2006 StandoutNobel
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
2017
Conservation of the Keap1-Nrf2 System: An Evolutionary Journey through Stressful Space and Time
2017
KLF1 drives the expression of fetal hemoglobin in British HPFH
2017
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
2010
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Toward Cool C4Crops
2013
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
2017 StandoutScience
Mobile Group II Introns
2004
CRISPR-Cpf1 correction of muscular dystrophy mutations in human cardiomyocytes and mice
2017
Systematic discovery of natural CRISPR-Cas12a inhibitors
2018 StandoutScienceNobel
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Pore-forming activity and structural autoinhibition of the gasdermin family
2016 StandoutNature
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
2007 Standout
Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation
2007 StandoutNobel
Accurate protein structure modeling using sparse NMR data and homologous structure information
2012 StandoutNobel
Generalized ensemble methods for de novo structure prediction
2009 StandoutNobel
Macromolecular Modeling with Rosetta
2008 StandoutNobel
Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation
2016
Comparative Protein Structure Modeling Using MODELLER
2007 Standout
Multiplexed genetic engineering of human hematopoietic stem and progenitor cells using CRISPR/Cas9 and AAV6
2017
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes
2014
Simultaneous precise editing of multiple genes in human cells
2019 StandoutNobel
Assessing genome assembly quality using the LTR Assembly Index (LAI)
2018
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
Templates are available to model nearly all complexes of structurally characterized proteins
2012
Comparative Protein Structure Modeling Using Modeller
2006 Standout
Disabling Cas9 by an anti-CRISPR DNA mimic
2017 StandoutNobel
Works of Therese Mitros being referenced
Sequence and genetic map of Meloidogyne hapla : A compact nematode genome for plant parasitism
2008
A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy
2012
Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling
2003
Domains 2 and 3 Interact to Form Critical Elements of the Group II Intron Active Site
2003
The octopus genome and the evolution of cephalopod neural and morphological novelties
2015 NatureNobel
Phytozome: a comparative platform for green plant genomics
2011 Standout
Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells
2016
Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing
2015