Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
Clonal competition with alternating dominance in multiple myeloma
2012
Evolution of the Cancer Stem Cell Model
2014 Standout
A survey of best practices for RNA-seq data analysis
2016 Standout
The Ensembl Variant Effect Predictor
2016 Standout
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
2016
Altered fecal microbiota composition in patients with major depressive disorder
2015 Standout
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
2018
TCC: an R package for comparing tag count data with robust normalization strategies
2013
Multiple myeloma
2014
The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead
2014
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
2014 Standout
Lineage-Specific Changes in Biomarkers in Great Apes and Humans
2015 StandoutNobel
Proteasome inhibitors in cancer therapy
2017
Psychobiotics: A Novel Class of Psychotropic
2013
Cancer heterogeneity: implications for targeted therapeutics
2013
A view on drug resistance in cancer
2019 StandoutNature
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
2012 Standout
RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides
2017 StandoutNobel
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
Effect of Immunosuppression on T-Helper 2 and B-Cell Responses to Influenza Vaccination
2015 StandoutNobel
Chronic inflammation in the etiology of disease across the life span
2019 Standout
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
2014 StandoutNature
Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota
2013
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
2017 Standout
The Human Intestinal Microbiome in Health and Disease
2016 Standout
AI in health and medicine
2022 Standout
Pancreatic cancer
2016 Standout
Hybrid Capture and Next-Generation Sequencing Identify Viral Integration Sites from Formalin-Fixed, Paraffin-Embedded Tissue
2011
Gut human microbiota and multiple sclerosis
2017
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
2018 Standout
Interaction between microbiota and immunity in health and disease
2020 Standout
Machine Learning methods for Quantitative Radiomic Biomarkers
2015 Standout
Colorectal cancer
2019 Standout
Inflammation and tumor progression: signaling pathways and targeted intervention
2021 Standout
Genetic Alterations Associated With Progression From Pancreatic Intraepithelial Neoplasia to Invasive Pancreatic Tumor
2013
Immunotherapy in colorectal cancer: rationale, challenges and potential
2019
SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution
2014
Vaccine adjuvants – understanding molecular mechanisms to improve vaccines
2014 StandoutNobel
Crohn's disease
2016 Standout
Drug repurposing: progress, challenges and recommendations
2018 Standout
Genetic regulation of gene expression in the epileptic human hippocampus
2017
Single-cell genetic analysis reveals the composition of initiating clones and phylogenetic patterns of branching and parallel evolution in myeloma
2014
Deep learning in histopathology: the path to the clinic
2021 Standout
Optimizing methods and dodging pitfalls in microbiome research
2017
Idiopathic pulmonary fibrosis
2017 Standout
Light‐Controlled Histone Deacetylase (HDAC) Inhibitors: Towards Photopharmacological Chemotherapy
2015 StandoutNobel
How were new medicines discovered?
2011 Standout
Development of intestinal microbiota in infants and its impact on health
2013
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
canEvolve: A Web Portal for Integrative Oncogenomics
2013
The landscape and therapeutic relevance of cancer-associated transcript fusions
2014
Lynch syndrome and urologic malignancies
2019
Future for probiotic science in functional food and dietary supplement development
2013
Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
2020
Assembly of long, error-prone reads using repeat graphs
2019 Standout
Gut microbiota, metabolites and host immunity
2016 Standout
Histone deacetylases and their inhibitors in cancer, neurological diseases and immune disorders
2014
Serotonin, tryptophan metabolism and the brain-gut-microbiome axis
2014 Standout
Glypican-1 identifies cancer exosomes and detects early pancreatic cancer
2015 StandoutNature
Synthetic lethal therapies for cancer: what’s next after PARP inhibitors?
2018
Next Generation Sequencing Analysis of Human Platelet PolyA+ mRNAs and rRNA-Depleted Total RNA
2013 StandoutNobel
A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
2012
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Development of tumor mutation burden as an immunotherapy biomarker: utility for the oncology clinic
2018 Standout
Variability in the immune system: of vaccine responses and immune states
2013
A survey of tools for variant analysis of next-generation genome sequencing data
2013
End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data
2016
It's the machine that matters: Predicting gene function and phenotype from protein networks
2010
The NCI60 human tumour cell line anticancer drug screen
2006 Standout
Whole Transcriptome Sequencing Reveals Gene Expression and Splicing Differences in Brain Regions Affected by Alzheimer's Disease
2011
Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data
2013
Human-Specific Transcriptional Networks in the Brain
2012
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Prostate Cancer
2019
Uncovering the Complexity of Transcriptomes with RNA-Seq
2010
Hypoxia-inducible factor induces cysteine dioxygenase and promotes cysteine homeostasis in Caenorhabditis elegans
2023 StandoutNobel
Management of glioblastoma: State of the art and future directions
2020 Standout
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
2015 Standout
SIRT3 deficiency promotes lung fibrosis by augmenting alveolar epithelial cell mitochondrial DNA damage and apoptosis
2017
Inhibition of NGLY1 Inactivates the Transcription Factor Nrf1 and Potentiates Proteasome Inhibitor Cytotoxicity
2017 StandoutNobel
Bladder Cancer
2020 Standout
Evolution of the immune system in humans from infancy to old age
2015 Standout
The ecology of the microbiome: Networks, competition, and stability
2015 StandoutScience
Emerging Targets in Photopharmacology
2016 StandoutNobel
Changing Face of Vaccination in Immunocompromised Hosts
2014
A distinct subpopulation of CD25−T-follicular regulatory cells localizes in the germinal centers
2017 StandoutNobel
Epigenetic biomarkers of promoter DNA methylation in the new era of cancer treatment
2018
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Works of Sumit Middha being referenced
New DNA Methylation Markers for Pancreatic Cancer: Discovery, Tissue Validation, and Pilot Testing in Pancreatic Juice
2015
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
2009
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data
2014
A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines
2011
3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer
2009
The human gut microbiome: current knowledge, challenges, and future directions
2012
Histone Deacetylase Inhibition Promotes Osteoblast Maturation by Altering the Histone H4 Epigenome and Reduces Akt Phosphorylation
2013
Genome-Wide Characterization of Transcriptional Patterns in High and Low Antibody Responders to Rubella Vaccination
2013
Mitochondrial Aging and Physical Decline: Insights From Three Generations of Women
2015
Comprehensively Evaluating cis -Regulatory Variation in the Human Prostate Transcriptome by Using Gene-Level Allele-Specific Expression
2015
Morphological characterization of colorectal cancers in The Cancer Genome Atlas reveals distinct morphology–molecular associations: clinical and biological implications
2016
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data
2011
Evaluation of Oligonucleotide Sequence Capture Arrays and Comparison of Next-Generation Sequencing Platforms for Use in Molecular Diagnostics
2010
Whole-genome sequencing of multiple myeloma from diagnosis to plasma cell leukemia reveals genomic initiating events, evolution, and clonal tides
2012
Reliable Pan-Cancer Microsatellite Instability Assessment by Using Targeted Next-Generation Sequencing Data
2017
The genetic landscape of endometrial clear cell carcinomas
2017
Whole exome sequencing in 75 high-risk families with validation and replication in independent case-control studies identifies TANGO2, OR5H14, and CHAD as new prostate cancer susceptibility genes
2016