Citation Impact
Citing Papers
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
2019 Standout
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
2007 StandoutScience
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
2009 Standout
Miniprimer PCR, a New Lens for Viewing the Microbial World
2007 StandoutNobel
Obesity alters gut microbial ecology
2005 Standout
Resolution of ray-finned fish phylogeny and timing of diversification
2012 Standout
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
The Human Oral Microbiome
2010 Standout
Taxon sampling and the accuracy of phylogenetic analyses
2008
BIGSdb: Scalable analysis of bacterial genome variation at the population level
2010 Standout
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
2013 Standout
Phylogenomics Revives Traditional Views on Deep Animal Relationships
2009 Standout
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
2011 Standout
A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
2001 Standout
Phylogenetic Placement of Retropinnid Fishes: Data Set Incongruence Can Be Reduced by Using Asymmetric Character State Transformation Costs
2002
Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods
2016
The global diversity of birds in space and time
2012 StandoutNature
Identifying localized biases in large datasets: A case study using the avian tree of life
2013
Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism
2005 Standout
A new genus of miniaturized and pug-nosed gecko from South America (Sphaerodactylidae: Gekkota)
2011
Improved Bootstrap Confidence Limits in Large-Scale Phylogenies, with an Example from Neo-Astragalus (Leguminosae)
2000
Missing data and the design of phylogenetic analyses
2005
Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation
2011
How Meaningful Are Bayesian Support Values?
2004
Molecular Phylogeny of a Cosmopolitan Group of Woodpeckers (Genus Picoides) Based on COI and cyt b Mitochondrial Gene Sequences
2002
ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION
2008 Standout
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
2012 Standout
Snakebite envenoming
2017 Standout
A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
2013
Gene tree discordance, phylogenetic inference and the multispecies coalescent
2009
Gene expression divergence recapitulates the developmental hourglass model
2010 Nature
Bayesian Inference of Species Trees from Multilocus Data
2009 Standout
The Taxonomic Impediment Overcome: NSF's Partnerships for Enhancing Expertise in Taxonomy (PEET) as a Model
2003
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
2008 Standout
Identification of Birds through DNA Barcodes
2004 Standout
Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
2005 Standout
Incongruence Between Morphological and Mitochondrial-DNA Characters Suggests Hybrid Origins of Parthenogenetic Weevil Lineages (Genus Aramigus)
1998
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
2005 Standout
Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes
2008
Genomics of the origin and evolution of Citrus
2018 StandoutNature
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
Bayesian mixed models and the phylogeny of pitvipers (Viperidae: Serpentes)
2006
The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms
2006
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
2018 Standout
Application of Phylogenetic Networks in Evolutionary Studies
2005 Standout
Tunicates and not cephalochordates are the closest living relatives of vertebrates
2006 StandoutNature
Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling
2012
Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes
2002
The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy
2011
Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration
2010 Standout
A molecular phylogeny of Equatorial African Lacertidae, with the description of a new genus and species from eastern Democratic Republic of the Congo
2011
PHYLOGENETIC ANALYSIS OF THE EVOLUTION OF THE NICHE IN LIZARDS OF THEANOLIS SAGREIGROUP
2006
Phylogenetic Relationships of North American Garter Snakes (Thamnophis) Based on Four Mitochondrial Genes: How Much DNA Sequence Is Enough?
2002
Broad phylogenomic sampling improves resolution of the animal tree of life
2008 StandoutNature
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
2014 Standout
An Approximately Unbiased Test of Phylogenetic Tree Selection
2002 Standout
Heterogeneity of Nucleotide Frequencies Among Evolutionary Lineages and Phylogenetic Inference
2003
TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE
2003 Standout
PARALLEL RADIATIONS IN THE PRIMARY CLADES OF BIRDS
2004
Phylogeny of the Major Lineages of Membracoidea (Insecta: Hemiptera: Cicadomorpha) Based on 28S rDNA Sequences
2001
Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
2010
Phylogenetic understanding of clonal populations in an era of whole genome sequencing
2009
Resolving the root of the avian mitogenomic tree by breaking up long branches
2006
TAXON SAMPLING, CORRELATED EVOLUTION, AND INDEPENDENT CONTRASTS
2000
MicroRNA-Driven Developmental Remodeling in the Brain Distinguishes Humans from Other Primates
2011 StandoutNobel
Coming to America: multiple origins of New World geckos
2010
Resolution of Phylogenetic Conflict in Large Data Sets by Increased Taxon Sampling
2006
Assessing the root of bilaterian animals with scalable phylogenomic methods
2009 Standout
Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships
2010
An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
2005
More Taxa or More Characters Revisited: Combining Data from Nuclear Protein-Encoding Genes for Phylogenetic Analyses of Noctuoidea (Insecta: Lepidoptera)
2000
PARALLEL RADIATIONS IN THE PRIMARY CLADES OF BIRDS
2004
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
The Global Decline of Nonmarine Mollusks
2004 Standout
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2016 StandoutNature
Incongruence Between Morphological Data Sets: An Example from the Evolution of Endoparasitism Among Parasitic Wasps (Hymenoptera: Braconidae)
1999
Darwin's dilemma: the realities of the Cambrian ‘explosion’
2006
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
2006 Standout
It is time for a new classification of anoles (Squamata: Dactyloidae)
2012
Parsimony, Phylogeny, and Genomics
2006
Profiling Phylogenetic Informativeness
2007
Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests
2004 Standout
Metaves, Mirandornithes, Strisores and other novelties - a critical review of the higher-level phylogeny of neornithine birds
2010
Calibration Choice, Rate Smoothing, and the Pattern of Tetrapod Diversification According to the Long Nuclear Gene RAG-1
2007
New Perspective on Uncultured Bacterial Phylogenetic Division OP11
2004
THE EVOLUTION OF ALTERNATIVE GENETIC SYSTEMS IN INSECTS
2002 Standout
Incomplete taxon sampling is not a problem for phylogenetic inference
2001
Total Evidence, Sequence Alignment, Evolution of Polychrotid Lizards, and a Reclassification of the Iguania (Squamata: Iguania)
2001
TAXON SAMPLING, CORRELATED EVOLUTION, AND INDEPENDENT CONTRASTS
2000
Prospects for inferring very large phylogenies by using the neighbor-joining method
2004 Standout
Hylid Frog Phylogeny and Sampling Strategies for Speciose Clades
2005
A window on the genetics of evolution:MC1Rand plumage colouration in birds
2005
Can Incomplete Taxa Rescue Phylogenetic Analyses from Long-Branch Attraction?
2005
Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion
2007
INSECT VECTORS OF PHYTOPLASMAS
2005 Standout
Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies
2018
Incongruence of Mitochondrial and Nuclear Gene Trees in the Carabid Beetles Ohomopterus
2001
Branch Lengths, Support, and Congruence: Testing the Phylogenomic Approach with 20 Nuclear Loci in Snakes
2008
Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA
2003 Standout
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
2001 StandoutScience
A Phylogenomic Study of Birds Reveals Their Evolutionary History
2008 StandoutScience
Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards
2005
Asynchronous Colonization of Madagascar by the Four Endemic Clades of Primates, Tenrecs, Carnivores, and Rodents as Inferred from Nuclear Genes
2005
Taxon Sampling Affects Inferences of Macroevolutionary Processes from Phylogenetic Trees
2008
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
2011
ASTRAL: genome-scale coalescent-based species tree estimation
2014 Standout
Incorporating Molecular Evolution into Phylogenetic Analysis, and a New Compilation of Conserved Polymerase Chain Reaction Primers for Animal Mitochondrial DNA
2006
Phylogenetic relationships and rate of early diversification of Australian Sphenomorphus group scincids (Scincoidea, Squamata)
2007
Polymorphism in Systematics and Comparative Biology
1999
Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
2007
TNT, a free program for phylogenetic analysis
2008 Standout
Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative
2006 Standout
Works of Steven Poe being referenced
Quantitative Tests of General Models for the Evolution of Development
2004
Evaluation of the Strategy of Long-Branch Subdivision to Improve the Accuracy of Phylogenetic Methods
2003
Philosophy and Phylogenetic Inference: A Comparison of Likelihood and Parsimony Methods in the Context of Karl Popper's Writings on Corroboration
2001
Sensitivity of Phylogeny Estimation to Taxonomic Sampling
1998
BIRDS IN A BUSH: FIVE GENES INDICATE EXPLOSIVE EVOLUTION OF AVIAN ORDERS
2004
Skull Characters and the Cladistic Relationships of the Hispaniolan Dwarf Twig Anolis
1998
PHYLOGENY OF ANOLES
2004
A striking new species of Anolis lizard (Squamata, Iguania) from Panama
2007
Evaluation of the Strategy of Long-Branch Subdivision to Improve the Accuracy of Phylogenetic Methods
2003
The Effect of Taxonomic Sampling on Accuracy of Phylogeny Estimation: Test Case of a Known Phylogeny
1998
Failed Refutations: Further Comments on Parsimony and Likelihood Methods and Their Relationship to Popper's Degree of Corroboration
2003
Data Set Incongruence and the Phylogeny of Crocodilians
1996
Data Set Incongruence and the Phylogeny of Crocodilians
1996
ANCIENT COLONIZATION PREDICTS RECENT NATURALIZATION IN ANOLIS LIZARDS
2011
BIRDS IN A BUSH: FIVE GENES INDICATE EXPLOSIVE EVOLUTION OF AVIAN ORDERS
2004
Patterns of ecomorphological convergence among mainland and island Anolis lizards
2010