Citation Impact
Citing Papers
Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation
2004 StandoutNobel
Plants with double genomes might have had a better chance to survive the Cretaceous–Tertiary extinction event
2009
A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
2003 StandoutScience
Regulators of PP2C Phosphatase Activity Function as Abscisic Acid Sensors
2009 StandoutScience
Switching from Repression to Activation: MicroRNAs Can Up-Regulate Translation
2007 StandoutScience
Cytosolic Ascorbate Peroxidase 1 Is a Central Component of the Reactive Oxygen Gene Network of Arabidopsis
2004
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Integrating sequence, evolution and functional genomics in regulatory genomics
2009
Finding regulatory elements and regulatory motifs: a general probabilistic framework
2007
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
2008 Standout
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2000 StandoutNature
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses
2015
Finishing the euchromatic sequence of the human genome
2004 StandoutNature
High Light Response of the Thylakoid Proteome in Arabidopsis Wild Type and the Ascorbate-Deficient Mutant vtc2-2. A Comparative Proteomics Study
2006
Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants
2016
Abiotic Stress Signaling and Responses in Plants
2016 Standout
The flowering world: a tale of duplications
2009
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
2002 Standout
MEME SUITE: tools for motif discovery and searching
2009 Standout
Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4
2006 Nature
The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia
2017 StandoutNobel
Combinatorial and computational challenges for biocatalyst design
2001 StandoutNatureNobel
Plastid signalling to the nucleus and beyond
2008
The plant heat stress transcription factor (Hsf) family: Structure, function and evolution
2011
Finding functional sequence elements by multiple local alignment
2004
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
2003 StandoutNature
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
2012
9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response
2011 Nature
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
2014 StandoutNature
Coordination of gene expression between organellar and nuclear genomes
2008
Discovering Sequence Motifs
2007
AU-rich transient response transcripts in the human genome: expressed sequence tag clustering and gene discovery approach
2004
Pattern Recognition Receptors and Inflammation
2010 Standout
Myo‐inositol abolishes salicylic acid‐dependent cell death and pathogen defence responses triggered by peroxisomal hydrogen peroxide
2010
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes
2006
The JAZ family of repressors is the missing link in jasmonate signalling
2007 StandoutNature
JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling
2007 StandoutNature
The molecular ecologist's guide to expressed sequence tags
2006
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
2012 StandoutNature
Catalase function in plants: a focus on Arabidopsis mutants as stress-mimic models
2010
Hippo Pathway in Organ Size Control, Tissue Homeostasis, and Cancer
2015 Standout
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
2008 StandoutNature
Prediction of Plant MicroRNA Targets
2002 Standout
Comparison of lignin deposition in three ectopic lignification mutants
2005
Ascorbate and Glutathione: The Heart of the Redox Hub
2011 Standout
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
2008
TRANSFAC: an integrated system for gene expression regulation
2000
Uncoupling High Light Responses from Singlet Oxygen Retrograde Signaling and Spatial-Temporal Systemic Acquired Acclimation
2016
microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants
2005 Standout
Reactive oxygen species homeostasis and signalling during drought and salinity stresses
2009 Standout
Cytosolic NADP-dependent isocitrate dehydrogenase contributes to redox homeostasis and the regulation of pathogen responses inArabidopsisleaves
2010
Hydrogen Peroxide in Plants: a Versatile Molecule of the Reactive Oxygen Species Network
2008
Plant pathogens and integrated defence responses to infection
2001 StandoutNature
Detecting the number of clusters of individuals using the software structure : a simulation study
2005 Standout
Complete inventory of soybean NAC transcription factors: Sequence conservation and expression analysis uncover their distinct roles in stress response
2009
Stress homeostasis – the redox and auxin perspective
2011
Towards a prokaryotic genomic taxonomy
2004
Ancestral polyploidy in seed plants and angiosperms
2011 StandoutNature
Origin, Biogenesis, and Activity of Plant MicroRNAs
2009 Standout
Zika Virus Outbreak on Yap Island, Federated States of Micronesia
2009 Standout
Retrograde signaling: Organelles go networking
2016
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
2008
AtMKK1 mediates ABA‐induced CAT1 expression and H2O2 production via AtMPK6‐coupled signaling in Arabidopsis
2008
Reactive oxygen signaling and abiotic stress
2008
IFNβ-dependent increases in STAT1, STAT2, and IRF9 mediate resistance to viruses and DNA damage
2013 StandoutNobel
Conditional oxidative stress responses in the Arabidopsis photorespiratory mutant cat2 demonstrate that redox state is a key modulator of daylength‐dependent gene expression, and define photoperiod as a crucial factor in the regulation of H 2 O 2 ‐induced cell death
2007
Computational prediction of eukaryotic protein-coding genes
2002
Quantifying similarity between motifs
2007
Progress and challenges in translating the biology of atherosclerosis
2011 StandoutNature
Reactive oxygen species generation and signaling in plants
2012
Interdependency of Brassinosteroid and Auxin Signaling in Arabidopsis
2004
Plant peroxisomes as a source of signalling molecules
2006
Hydrogen peroxide priming modulates abiotic oxidative stress tolerance: insights from ROS detoxification and scavenging
2015
Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics
2008
The contentious nature of soil organic matter
2015 StandoutNature
Reactive oxygen gene network of plants
2004 Standout
Two Modes of Transcriptional Activation at Native Promoters by NF-κB p65
2009
Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals
2009
Full-length messenger RNA sequences greatly improve genome annotation
2002
A Comprehensive Analysis of the Combined Effects of High Light and High Temperature Stresses on Gene Expression in Sunflower
2008
Exploring plant biodiversity: the Physcomitrella genome and beyond
2008
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
Cross-Referencing Eukaryotic Genomes: TIGR Orthologous Gene Alignments (TOGA)
2002
Spreading the news: subcellular and organellar reactive oxygen species production and signalling
2016
H2O2-Activated Up-Regulation of Glutathione in Arabidopsis Involves Induction of Genes Encoding Enzymes Involved in Cysteine Synthesis in the Chloroplast
2009
Strigolactone inhibition of shoot branching
2008 StandoutNature
Submergence-responsive MicroRNAs are Potentially Involved in the Regulation of Morphological and Metabolic Adaptations in Maize Root Cells
2008
Redox Regulation in Photosynthetic Organisms: Signaling, Acclimation, and Practical Implications
2008
Specificity in ROS Signaling and Transcript Signatures
2013
The map-based sequence of the rice genome
2005 StandoutNature
Photorespiratory Metabolism: Genes, Mutants, Energetics, and Redox Signaling
2009
Search and Discovery Strategies for Biotechnology: the Paradigm Shift
2000
Singlet Oxygen Is the Major Reactive Oxygen Species Involved in Photooxidative Damage to Plants
2008
Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses
2011 StandoutNobel
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
Contrasting Modes of Diversification in the Aux/IAA and ARF Gene Families
2004
Mechanism of Enhanced Superoxide Production in the Cytochrome b6f Complex of Oxygenic Photosynthesis
2013
Trends and Challenges in Pesticide Resistance Detection
2016
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
The Absence of ALTERNATIVE OXIDASE1a in Arabidopsis Results in Acute Sensitivity to Combined Light and Drought Stress
2008
Comparing Photosynthetic and Photovoltaic Efficiencies and Recognizing the Potential for Improvement
2011 StandoutScience
Actin, a Central Player in Cell Shape and Movement
2009 StandoutScience
ABA Is an Essential Signal for Plant Resistance to Pathogens Affecting JA Biosynthesis and the Activation of Defenses inArabidopsis
2007
Lignin Valorization: Improving Lignin Processing in the Biorefinery
2014 StandoutScience
Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-GlucosyltransferaseUGT74E2ModulatesArabidopsisArchitecture and Water Stress Tolerance
2010
Transcriptomic Footprints Disclose Specificity of Reactive Oxygen Species Signaling in Arabidopsis
2006
Glutathione
2011
Worldwide emergence of resistance to antifungal drugs challenges human health and food security
2018 StandoutScience
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
2009 Standout
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes
2000 StandoutScience
Comparison of vero cell plaque assay, TaqMan reverse transcriptase polymerase chain reaction RNA assay, and VecTest antigen assay for detection of West Nile virus in field-collected mosquitoes.
2002
Double Mutants Deficient in Cytosolic and Thylakoid Ascorbate Peroxidase Reveal a Complex Mode of Interaction between Reactive Oxygen Species, Plant Development, and Response to Abiotic Stresses
2007
Humic substances affect Arabidopsis physiology by altering the expression of genes involved in primary metabolism, growth and development
2011
A De Novo Mutation inTEAD1Causes Non–X-Linked Aicardi Syndrome
2015
Structural Dynamics of Eukaryotic Chromosome Evolution
2003 StandoutScience
Human DNA Repair Genes
2001 StandoutScienceNobel
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
2009
AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis
2012
Extensive Duplication and Reshuffling in the Arabidopsis Genome
2000
Peroxisomal Hydrogen Peroxide Is Coupled to Biotic Defense Responses by ISOCHORISMATE SYNTHASE1 in a Daylength-Related Manner
2010
Reactive oxygen species, abiotic stress and stress combination
2016 Standout
Works of Stéphane Rombauts being referenced
Computational Approaches to Identify Promoters and cis-Regulatory Elements in Plant Genomes
2003
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
2012
EST data suggest that poplar is an ancient polyploid
2005
Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thalianasequences
1999
Characterization of two distinct DP‐related genes from Arabidopsis thaliana1
2000
Systematic analysis of cell‐cycle gene expression during Arabidopsis development
2009
Genome annotation: which tools do we have for it?
1999
Analysis of RNA-Seq Data with TopHat and Cufflinks for Genome-Wide Expression Analysis of Jasmonate-Treated Plants and Plant Cultures
2013
INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling
2002
PlantCARE, a plant cis-acting regulatory element database
1999
Genome‐scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
2008
How many genes are there in plants (… and why are they there)?
2007
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
2001
AFLPinSilico, simulating AFLP fingerprints
2003
Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana
2004
Moss transcriptome and beyond
2002
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes
2002
AGRONOMICS1: A New Resource for Arabidopsis Transcriptome Profiling
2009
A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae
2012
Genome-Wide Analysis of Core Cell Cycle Genes in Arabidopsis
2002
Genome-Wide Analysis of Hydrogen Peroxide-Regulated Gene Expression in Arabidopsis Reveals a High Light-Induced Transcriptional Cluster Involved in Anthocyanin Biosynthesis
2005