Citation Impact
Citing Papers
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
Nature of the protein universe
2009 StandoutNobel
Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells
2013 StandoutScience
The maternal interleukin-17a pathway in mice promotes autism-like phenotypes in offspring
2016 StandoutScience
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion
2015 StandoutScienceNobel
Trained immunity: A program of innate immune memory in health and disease
2016 StandoutScience
Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes
2010 StandoutScience
Cerebral cortex expansion and folding: what have we learned?
2016
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Peptides Encoded by Short ORFs Control Development and Define a New Eukaryotic Gene Family
2007
RNA structure and the mechanisms of alternative splicing
2011
The Genetic Signatures of Noncoding RNAs
2009
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
Eukaryotic regulatory RNAs: an answer to the ‘genome complexity’ conundrum
2007
C2H2 zinc finger proteins greatly expand the human regulatory lexicon
2015
SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data
2012
KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
2017 Nature
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
Robo4 Cooperates with Cxcr4 to Specify Hematopoietic Stem Cell Localization to Bone Marrow Niches
2011
Understanding the transcriptome through RNA structure
2011
Automated server predictions in CASP7
2007
Gene Expression Commons: An Open Platform for Absolute Gene Expression Profiling
2012
N-Cadherin Expression Level Distinguishes Reserved versus Primed States of Hematopoietic Stem Cells
2008
Non-coding RNAs, epigenetics and complexity
2007
The RNA structurome: transcriptome-wide structure probing with next-generation sequencing
2015
A novel noncoding RNA processed by Drosha is restricted to nucleus in mouse
2008
Structure and function of long noncoding RNAs in epigenetic regulation
2013 Standout
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE
2016
The Human Transcription Factors
2018 Standout
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
2011 Standout
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
The bone marrow niche for haematopoietic stem cells
2014 StandoutNature
The relationship between non‐protein‐coding DNA and eukaryotic complexity
2007
SLAM Family Markers Resolve Functionally Distinct Subpopulations of Hematopoietic Stem Cells and Multipotent Progenitors
2013
RNA-binding proteins in neurodegeneration: Seq and you shall receive
2015
Genome-wide transcription and the implications for genomic organization
2007
Raising the estimate of functional human sequences: Figure 1.
2007
The Outer Subventricular Zone and Primate-Specific Cortical Complexification
2015
Noncoding RNA in development
2008
Long non-coding RNAs: new players in cell differentiation and development
2013 Standout
Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants
2013
Analysis of Human Accelerated DNA Regions Using Archaic Hominin Genomes
2012 StandoutNobel
Detection of nonneutral substitution rates on mammalian phylogenies
2009
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
2007
Unwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs
2008
Widespread Translational Remodeling during Human Neuronal Differentiation
2017 StandoutNobel
Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells
2009
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
2011 StandoutNature
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Massively Parallel RNA Chemical Mapping with a Reduced Bias MAP-Seq Protocol
2013
Cell-cycle control and cortical development
2007
Origin of phenotypes: Genes and transcripts
2007
Understanding cellular networks to improve hematopoietic stem cell expansion cultures
2006
The Reality of Pervasive Transcription
2011
Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage
2007
Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages
2010
Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease
2012
Genome-wide Measurement of RNA Folding Energies
2012
Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3′ UTRs
2012
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development
2009
Comprehensive identification and analysis of human accelerated regulatory DNA
2015
Human-specific loss of regulatory DNA and the evolution of human-specific traits
2011 Nature
Functional and Evolutionary Insights into Human Brain Development through Global Transcriptome Analysis
2009
Long intronic noncoding RNA transcription: Expression noise or expression choice?
2008
Cerebral organoids model human brain development and microcephaly
2013 StandoutNature
The Hallmarks of Aging
2013 Standout
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
2013 Nature
RESURRECTING THE ROLE OF TRANSCRIPTION FACTOR CHANGE IN DEVELOPMENTAL EVOLUTION
2008
Global analysis of alternative splicing differences between humans and chimpanzees
2007
Evolution and Functions of Long Noncoding RNAs
2009 Standout
Rise of the RNA Machines: Exploring the Structure of Long Non-Coding RNAs
2013
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
2010 StandoutNature
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Constraints and plasticity in genome and molecular-phenome evolution
2010
Initial impact of the sequencing of the human genome
2011 Nature
Widespread purifying selection on RNA structure in mammals
2013
Evolution of the Human Nervous System Function, Structure, and Development
2017
The Human Condition—A Molecular Approach
2014 StandoutNobel
Long noncoding RNAs: functional surprises from the RNA world
2009 Standout
Long non-coding RNAs: insights into functions
2009 Standout
Development and Evolution of the Human Neocortex
2011
Human-Specific Transcriptional Networks in the Brain
2012
A long nuclear‐retained non‐coding RNA regulates synaptogenesis by modulating gene expression
2010
Global Analysis of RNA Secondary Structure in Two Metazoans
2012
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
2015 StandoutNature
Emerging roles of neural stem cells in cerebral cortex development and evolution
2012
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
2013 StandoutNobel
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Chemical Topology: Complex Molecular Knots, Links, and Entanglements
2011 StandoutNobel
Genome Regulation by Long Noncoding RNAs
2012 Standout
Specific expression of long noncoding RNAs in the mouse brain
2008
DNA analysis of an early modern human from Tianyuan Cave, China
2013 StandoutNobel
Modeling and automation of sequencing-based characterization of RNA structure
2011 StandoutNobel
Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
2011 StandoutNobel
The translational landscape of the splicing factor SRSF1 and its role in mitosis
2014
Trends and Challenges in Pesticide Resistance Detection
2016
Clustering to identify RNA conformations constrained by secondary structure
2011 StandoutNobel
Contrasts between adaptive coding and noncoding changes during human evolution
2010
Human TKTL1 implies greater neurogenesis in frontal neocortex of modern humans than Neanderthals
2022 StandoutScienceNobel
Mobilization of LINE-1 retrotransposons is restricted by Tex19.1 in mouse embryonic stem cells
2017
Worldwide emergence of resistance to antifungal drugs challenges human health and food security
2018 StandoutScience
Long Noncoding RNAs: Past, Present, and Future
2013 Standout
A Mutate-and-Map Strategy for Inferring Base Pairs in Structured Nucleic Acids: Proof of Concept on a DNA/RNA Helix
2010
The biology of aging: 1985–2010 and beyond
2011
The Eukaryotic Genome as an RNA Machine
2008 Science
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
2009
Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal
2012 StandoutNobel
Polysialic acid governs T-cell development by regulating progenitor access to the thymus
2009 StandoutNobel
Growth Factors, Matrices, and Forces Combine and Control Stem Cells
2009 StandoutScience
KRAB zinc finger proteins
2017
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
2007
Coexistence of Quiescent and Active Adult Stem Cells in Mammals
2010 StandoutScience
Tunable protein synthesis by transcript isoforms in human cells
2016 StandoutNobel
Rapid knot detection and application to protein structure prediction
2006
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Both Noncoding and Protein-Coding RNAs Contribute to Gene Expression Evolution in the Primate Brain
2010
Efficient Transplantation via Antibody-Based Clearance of Hematopoietic Stem Cell Niches
2007 Science
Works of Sol Katzman being referenced
Confirmation of the cellular targets of benomyl and rapamycin using next-generation sequencing of resistant mutants in S. cerevisiae
2014
Differential Expression of Novel Potential Regulators in Hematopoietic Stem Cells
2005
An RNA gene expressed during cortical development evolved rapidly in humans
2006 Nature
Frac-seq reveals isoform-specific recruitment to polyribosomes
2013
Forces Shaping the Fastest Evolving Regions in the Human Genome
2006
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
2014 Nature
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
2010
Human Genome Ultraconserved Elements Are Ultraselected
2007 Science
SAM-T04: What is new in protein-structure prediction for CASP6
2005