Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
A noninflammatory mRNA vaccine for treatment of experimental autoimmune encephalomyelitis
2021 StandoutScienceNobel
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
2019 Standout
Inference and analysis of cell-cell communication using CellChat
2021 Standout
An integrated map of genetic variation from 1,092 human genomes
2012 StandoutNature
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
2014 Standout
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
2018
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
Fast, sensitive and accurate integration of single-cell data with Harmony
2019 Standout
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data
2019
Dicer-TRBP Complex Formation Ensures Accurate Mammalian MicroRNA Biogenesis
2014 StandoutNobel
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
2014 StandoutNature
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
AI in health and medicine
2022 Standout
Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
2019
The changing landscape of atherosclerosis
2021 StandoutNature
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
2014 Standout
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
Salmon provides fast and bias-aware quantification of transcript expression
2017 Standout
Molecular and Genetic Properties of Tumors Associated with Local Immune Cytolytic Activity
2015 Standout
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
2016 Standout
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
2020 Standout
A test metric for assessing single-cell RNA-seq batch correction
2018
Diet rapidly and reproducibly alters the human gut microbiome
2013 StandoutNature
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
2019 Standout
HISAT: a fast spliced aligner with low memory requirements
2015 Standout
Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer
2017 StandoutNobel
Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis
2020
Distinct Foxp3 enhancer elements coordinate development, maintenance, and function of regulatory T cells
2021 StandoutNobel
A thermostable Cas9 with increased lifetime in human plasma
2017 StandoutNobel
Fast gapped-read alignment with Bowtie 2
2012 Standout
Dimensionality reduction for visualizing single-cell data using UMAP
2018 Standout
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity
2024 StandoutNobel
Structure and Activity of the RNA-Targeting Type III-B CRISPR-Cas Complex of Thermus thermophilus
2013 StandoutNobel
Geometric Sketching Compactly Summarizes the Single-Cell Transcriptomic Landscape
2019
Integrative single-cell analysis
2019
Comprehensive Integration of Single-Cell Data
2019 Standout
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
2016 StandoutNatureNobel
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
2016 Standout
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19
2020 Standout
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
2013 Standout
Single Cell RNA Sequencing in Atherosclerosis Research
2020
Efficient construction of an assembly string graph using the FM-index
2010
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
2013 Standout
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
2018 StandoutScienceNobel
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
2015 Standout
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
2013 Standout
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
Works of Simon Wong being referenced
Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
2017
High Throughput Short Read Alignment via Bi-directional BWT
2009