Standout Papers

Rapid phylogenetic analysis of large samples of recombinant bacterial wh... 2010 2026 2015 2020 1.6k
  1. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins (2014)
    Nicholas J. Croucher, Andrew J. Page et al. Nucleic Acids Research
  2. A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers (2012)
    Michael A. Quail, Miriam Smith et al. BMC Genomics
  3. Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data (2011)
    Tim Carver, Simon R. Harris et al. Bioinformatics
  4. Evolution of MRSA During Hospital Transmission and Intercontinental Spread (2010)
    Simon R. Harris, Edward J. Feil et al. Science
  5. SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments (2016)
    Andrew J. Page, Ben Taylor et al. Microbial Genomics
  6. Circlator: automated circularization of genome assemblies using long sequencing reads (2015)
    Martin Hunt, Nishadi De Silva et al. Genome biology
  7. Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study (2013)
    Josephine M. Bryant, Dorothy Grogono et al. The Lancet
  8. Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak (2012)
    Claudio U. Köser, Matthew T. G. Holden et al. New England Journal of Medicine
  9. Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study (2012)
    Simon R. Harris, Edward J. P. Cartwright et al. The Lancet Infectious Diseases
  10. Phandango: an interactive viewer for bacterial population genomics (2017)
    James Hadfield, Nicholas J. Croucher et al. Bioinformatics
  11. ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads (2017)
    Martin Hunt, Alison E. Mather et al. Microbial Genomics
  12. Evolution and transmission of drug-resistant tuberculosis in a Russian population (2014)
    Nicola Casali, Vladyslav Nikolayevskyy et al. Nature Genetics

Immediate Impact

5 by Nobel laureates 24 from Science/Nature 64 standout
Sub-graph 1 of 22

Citing Papers

Gut microbiota carcinogen metabolism causes distal tissue tumours
2024 StandoutNature
The scope of the antimicrobial resistance challenge
2024 Standout
12 intermediate papers

Works of Simon R. Harris being referenced

The Distribution and Spread of Susceptible and Resistant Neisseria gonorrhoeae Across Demographic Groups in a Major Metropolitan Center
2020
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
2012 Standout
and 18 more

Author Peers

Author Last Decade Papers Cites
Simon R. Harris 6066 4532 4076 148 15.3k
Edward J. Feil 7453 6222 3853 170 19.4k
Matthew T. G. Holden 6963 5174 2326 201 14.6k
Stephen D. Bentley 5853 4449 6425 274 16.5k
Torsten Seemann 8504 4726 2824 167 19.5k
Xavier Didelot 4033 3069 2189 156 10.6k
Rob J. L. Willems 4772 8097 2277 224 13.6k
Mark Achtman 6338 2267 3017 173 17.8k
Keith A. Jolley 2906 2220 3799 144 10.9k
Stephen B. Calderwood 3695 3899 3568 231 15.4k
Michael A. Quail 7233 2699 2319 125 14.8k

All Works

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2026