Citation Impact
Citing Papers
Voltage sensor conformations in the open and closed states in rosetta structural models of K + channels
2006 StandoutNobel
A fluorescent probe designed for studying protein conformational change
2005 StandoutNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Molecular Architecture of the KvAP Voltage-Dependent K + Channel in a Lipid Bilayer
2004 Science
Structure of the human TRPM4 ion channel in a lipid nanodisc
2017 StandoutScienceNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
A Light-Actuated Nanovalve Derived from a Channel Protein
2005 StandoutScienceNobel
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Structure of the human epithelial sodium channel by cryo-electron microscopy
2018
On the Role of a Conserved Methionine in the Na+-Coupling Mechanism of a Neurotransmitter Transporter Homolog
2021
Role of the lipid bilayer in outer membrane protein folding in Gram-negative bacteria
2020
The Protonation State of the Glu-71/Asp-80 Residues in the KcsA Potassium Channel: A First-Principles QM/MM Molecular Dynamics Study
2007
Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations
2007
The open pore conformation of potassium channels
2002 StandoutNatureNobel
Ions and Counterions in a Biological Channel: A Molecular Dynamics Simulation of OmpF Porin from Escherichia coli in an Explicit Membrane with 1M KCl Aqueous Salt Solution
2002
Structure of the TRPA1 ion channel suggests regulatory mechanisms
2015 StandoutNatureNobel
Discoveries in structure and physiology of mechanically activated ion channels
2020 StandoutNatureNobel
Dynamic personalities of proteins
2007 StandoutNature
QM/MM Methods for Biomolecular Systems
2009 Standout
X-Ray Structure of Acid-Sensing Ion Channel 1–Snake Toxin Complex Reveals Open State of a Na+-Selective Channel
2014 StandoutNobel
Atomic Proximity between S4 Segment and Pore Domain in Shaker Potassium Channels
2003
Modeling electrostatic effects in proteins
2006 StandoutNobel
Channel opening and gating mechanism in AMPA-subtype glutamate receptors
2017 StandoutNatureNobel
An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins
2003
Dynamics of the Kv1.2 Voltage-Gated K+ Channel in a Membrane Environment
2007
Structure of the Type VI Secretion System Contractile Sheath
2015 StandoutNobel
High-resolution crystal structure of human protease-activated receptor 1
2012 StandoutNatureNobel
Coarse grained model for exploring voltage dependent ion channels
2011 StandoutNobel
Empirical force fields for biological macromolecules: Overview and issues
2004
Chemistry of ion coordination and hydration revealed by a K+ channel–Fab complex at 2.0 Å resolution
2001 StandoutNatureNobel
Crystal structure refinement withSHELXL
2014 Standout
Irritant-evoked activation and calcium modulation of the TRPA1 receptor
2020 StandoutNatureNobel
Piezo proteins are pore-forming subunits of mechanically activated channels
2012 StandoutNatureNobel
Probing ion permeation and gating in a K+ channel with backbone mutations in the selectivity filter
2001
Molecular Dynamics Simulation for All
2018 Standout
Structure of the KcsA channel intracellular gate in the open state.
2001
The barrier for proton transport in aquaporins as a challenge for electrostatic models: The role of protein relaxation in mutational calculations
2006 StandoutNobel
Structure and function of an irreversible agonist-β2 adrenoceptor complex
2011 StandoutNatureNobel
Constructing ion channels from water-soluble α-helical barrels
2021
Molecular Determinants of Species-Specific Activation or Blockade of TRPA1 Channels
2008
Structure and Function of the Membrane Anchor Domain of Hepatitis C Virus Nonstructural Protein 5A
2004
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Folding membrane proteins in vitro: A table and some comments
2014
PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure
2009
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
2011 StandoutNatureNobel
A Cell-Penetrating Scorpion Toxin Enables Mode-Specific Modulation of TRPA1 and Pain
2019 StandoutNobel
TRPV1 structures in distinct conformations reveal activation mechanisms
2013 StandoutNatureNobel
Generalized born model with a simple smoothing function
2003
A Glimpse of Structural Biology through X-Ray Crystallography
2014
Outlines of the pore in open and closed conformations describe the gating mechanism of ASIC1
2011
Structure of the TRPV1 ion channel determined by electron cryo-microscopy
2013 StandoutNatureNobel
TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action
2016 StandoutNatureNobel
Polarization effects and charge transfer in the KcsA potassium channel
2006
Ion selectivity in potassium channels
2006
Structural snapshots of TRPV1 reveal mechanism of polymodal functionality
2021 StandoutNobel
Near-Atomic Resolution for One State of F-Actin
2014
Processing of Electron Diffraction Patterns with the XDP Program
2012
Structural mechanism of C-type inactivation in K+ channels
2010 Nature
Dynamic Water Networks in Cytochrome c Oxidase from Paracoccus denitrificans Investigated by Molecular Dynamics Simulations
2004 Nobel
Structure of the zinc-binding domain of an essential component of the hepatitis C virus replicase
2005 StandoutNatureNobel
Structure and dynamics of the M3 muscarinic acetylcholine receptor
2012 StandoutNatureNobel
Membranes are more mosaic than fluid
2005 Nature
A Non-canonical Voltage-Sensing Mechanism Controls Gating in K2P K+ Channels
2016
De novo Folding of Membrane Proteins: An Exploration of the Structure and NMR Properties of the fd Coat Protein
2004
Merging functional studies with structures of inward-rectifier K+ channels
2003
Titration Behavior of Residues at the Entrance of the D-Pathway of Cytochrome c Oxidase from Paracoccus denitrificans Investigated by Continuum Electrostatic Calculations
2005 Nobel
Computational Studies of Membrane Channels
2004
Deprotonation Mechanism of NH4+ in the Escherichia coli Ammonium Transporter AmtB: Insight from QM and QM/MM Calculations
2007
Toward high-resolution prediction and design of transmembrane helical protein structures
2007 StandoutNobel
A generalized Born formalism for heterogeneous dielectric environments: Application to the implicit modeling of biological membranes
2005
Combining implicit solvation models with hybrid quantum mechanical/molecular mechanical methods: A critical test with glycine
2002
Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus
2005
Electrostatics and dynamics of proteins
2003
Structure and activity of the acid-sensing ion channels
2012
Water as an Active Constituent in Cell Biology
2007 Standout
CHARMM‐GUI: A web‐based graphical user interface for CHARMM
2008 Standout
Cholesterol increases kinetic, energetic, and mechanical stability of the human β2-adrenergic receptor
2012 StandoutNobel
Calculation of the dielectric permittivity profile for a nonuniform system: Application to a lipid bilayer simulation
2003
Constitutive Activation of the Shaker Kv Channel
2003
Effective energy function for proteins in lipid membranes
2003
Electrostatic origin of the mechanochemical rotary mechanism and the catalytic dwell of F1-ATPase
2011 StandoutNobel
Pressure-Based Long-Range Correction for Lennard-Jones Interactions in Molecular Dynamics Simulations: Application to Alkanes and Interfaces
2003
Deprotonation Mechanism of NH4+ in the Escherichia coli Ammonium Transporter AmtB: Insight from QM and QM/MM Calculations
2007
Electrostatic basis for the unidirectionality of the primary proton transfer in cytochrome c oxidase
2008 StandoutNobel
Efficiency and Accuracy of the Generalized Solvent Boundary Potential for Hybrid QM/MM Simulations: Implementation for Semiempirical Hamiltonians
2008
Realistic simulation of the activation of voltage-gated ion channels
2012 StandoutNobel
Molecular dynamics and protein function
2005
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
2010 Standout
Molecular Dynamics: Survey of Methods for Simulating the Activity of Proteins
2006
Through the Channel and around the Channel: Validating and Comparing Microscopic Approaches for the Evaluation of Free Energy Profiles for Ion Penetration through Ion Channels
2005 StandoutNobel
Progress in Modeling of Protein Structures and Interactions
2005 StandoutScienceNobel
Peptide and Protein Folding and Conformational Equilibria: Theoretical Treatment of Electrostatics and Hydrogen Bonding with Implicit Solvent Models
2005
Monte Carlo simulations of proton pumps: On the working principles of the biological valve that controls proton pumping in cytochrome c oxidase
2006 StandoutNobel
Electrostatic Basis for Enzyme Catalysis
2006 StandoutNobel
Ion permeation in K + channels occurs by direct Coulomb knock-on
2014 Science
“Proton Holes” in Long-Range Proton Transfer Reactions in Solution and Enzymes: A Theoretical Analysis
2006
Structural insight into TRPV5 channel function and modulation
2019 StandoutNobel
Reliable treatment of electrostatics in combined QM/MM simulation of macromolecules
2005
Quantum Mechanical Continuum Solvation Models
2005 Standout
Polarizable Force Fields: History, Test Cases, and Prospects
2007 StandoutNobel
Molecular Template for a Voltage Sensor in a Novel K+ Channel. III. Functional Reconstitution of a Sensorless Pore Module from a Prokaryotic Kv Channel
2008
Structure of the Acid-sensing ion channel 1 in complex with the gating modifier Psalmotoxin 1
2012
Structural insights into TRPM8 inhibition and desensitization
2019 StandoutScienceNobel
pKa Analysis for the Zinc-Bound Water in Human Carbonic Anhydrase II: Benchmark for “Multiscale” QM/MM Simulations and Mechanistic Implications
2007
Structural basis for gating charge movement in the voltage sensor of a sodium channel
2011 StandoutNobel
Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces
2015 StandoutScienceNobel
Works of Simon Bernèche being referenced
A microscopic view of ion conduction through the K+ channel
2003
Theoretical and computational models of biological ion channels
2004
NanC Crystal Structure, a Model for Outer-Membrane Channels of the Acidic Sugar-Specific KdgM Porin Family
2009
An antiparallel actin dimer is associated with the endocytic pathway in mammalian cells
2011
A Stable Water Chain in the Hydrophobic Pore of the AmtB Ammonium Transporter
2007
Molecular Dynamics of the KcsA K+ Channel in a Bilayer Membrane
2000
Absence of Ion-Binding Affinity in the Putatively Inactivated Low-[K+] Structure of the KcsA Potassium Channel
2011
A Gate in the Selectivity Filter of Potassium Channels
2005
Molecular Dynamics Simulation of Melittin in a Dimyristoylphosphatidylcholine Bilayer Membrane
1998
Anchoring of a monotopic membrane protein: the binding of prostaglandin H2 synthase-1 to the surface of a phospholipid bilayer
2000
A Combined Computational and Functional Approach Identifies New Residues Involved in pH-dependent Gating of ASIC1a
2010
Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
2004 Nature
Energetics of ion conduction through the K+ channel
2001 Nature
The Ionization State and the Conformation of Glu-71 in the KcsA K+ Channel
2002
Collaborative EM image processing with the IPLT image processing library and toolbox
2006
The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli
2004
Molecular determinants of desensitization in an ENaC/degenerin channel
2013
Ion Channels, Permeation, and Electrostatics: Insight into the Function of KcsA
2000
Conformational dynamics and role of the acidic pocket in ASIC pH-dependent gating
2017
Extracellular Blockade of K+ Channels by Tea
2001
Ion selectivity in channels and transporters
2011
Generalized solvent boundary potential for computer simulations
2001