Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
Generation of knock-in primary human T cells using Cas9 ribonucleoproteins
2015 StandoutNobel
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
2009 StandoutScience
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
A sex-biased imbalance between Tfr, Tph, and atypical B cells determines antibody responses in COVID-19 patients
2023 StandoutNobel
Natural selection interacts with recombination to shape the evolution of hybrid genomes
2018 Science
Denisovan ancestry and population history of early East Asians
2020 StandoutScienceNobel
Resurrecting Surviving Neandertal Lineages from Modern Human Genomes
2014 Science
The microbiota regulates type 2 immunity through RORγt + T cells
2015 StandoutScienceNobel
PD-1 + regulatory T cells amplified by PD-1 blockade promote hyperprogression of cancer
2019 StandoutNobel
COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures
2016
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
2011
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
2012
An integrated map of genetic variation from 1,092 human genomes
2012 StandoutNature
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
2018
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Transcription factor Foxp3 and its protein partners form a complex regulatory network
2012
T cell receptor signalling in the control of regulatory T cell differentiation and function
2016
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
2010
RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2
2020
CD22 blockade restores homeostatic microglial phagocytosis in ageing brains
2019 StandoutNatureNobel
Environment Drives Selection and Function of Enhancers Controlling Tissue-Specific Macrophage Identities
2014
The genomic landscape of Neanderthal ancestry in present-day humans
2014 StandoutNatureNobel
Predicting cell-type–specific gene expression from regions of open chromatin
2012
Continuous requirement for the TCR in regulatory T cell function
2014
DNase I sensitivity QTLs are a major determinant of human expression variation
2012 Nature
The Transcription Factor FoxO1 Sustains Expression of the Inhibitory Receptor PD-1 and Survival of Antiviral CD8+ T Cells during Chronic Infection
2014
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
2011 StandoutNatureNobel
Transcription Dynamics
2009
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
Identifying Recent Adaptations in Large-Scale Genomic Data
2013
Regulatory T cells in autoimmune disease
2018
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
FOXP3 and scurfy: how it all began
2014 StandoutNobel
MLL4 prepares the enhancer landscape for Foxp3 induction via chromatin looping
2017
The NIH Roadmap Epigenomics Mapping Consortium
2010
The regulation of immune tolerance by FOXP3
2017
HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNARMRP
2016
Atlas of Subcellular RNA Localization Revealed by APEX-Seq
2019
The primary transcriptome of the major human pathogen Helicobacter pylori
2010 StandoutNature
Harnessing the plasticity of CD4+ T cells to treat immune-mediated disease
2016
Regulatory T cells in cancer immunotherapy
2016 StandoutNobel
Regulatory T Cells: Molecular and Cellular Basis for Immunoregulation
2017
Regulatory RNAs in Bacteria
2009
The major genetic risk factor for severe COVID-19 is inherited from Neanderthals
2020 StandoutNatureNobel
An artificial PPR scaffold for programmable RNA recognition
2014
Targeting Treg signaling for the treatment of autoimmune diseases
2015
Analyses of a Mutant Foxp3 Allele Reveal BATF as a Critical Transcription Factor in the Differentiation and Accumulation of Tissue Regulatory T Cells
2017
Control of the Inheritance of Regulatory T Cell Identity by a cis Element in the Foxp3 Locus
2014
NF-κB c-Rel Is Crucial for the Regulatory T Cell Immune Checkpoint in Cancer
2017
The effects of mitochondria-associated long noncoding RNAs in cancer mitochondria: New players in an old arena
2018
Distinct Foxp3 enhancer elements coordinate development, maintenance, and function of regulatory T cells
2021 StandoutNobel
Modification of Enhancer Chromatin: What, How, and Why?
2013
RNA sequencing uncovers antisense RNAs and novel small RNAs inStreptococcus pyogenes
2015 StandoutNobel
Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column
2009 Nature
Charting histone modifications and the functional organization of mammalian genomes
2010
The plasticity and stability of regulatory T cells
2013 StandoutNobel
Comprehensive identification and analysis of human accelerated regulatory DNA
2015
Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
2011
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
2013 Standout
Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development
2011
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
2013 StandoutNature
DNase-seq: A High-Resolution Technique for Mapping Active Gene Regulatory Elements across the Genome from Mammalian Cells
2010
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
Regulatory T Cell-Specific Epigenomic Region Variants Are a Key Determinant of Susceptibility to Common Autoimmune Diseases
2020 StandoutNobel
Topological domains in mammalian genomes identified by analysis of chromatin interactions
2012 StandoutNature
Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers
2012
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
2010
Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment
2014 Standout
Development and Maintenance of Regulatory T cells
2013 StandoutNobel
The Human Condition—A Molecular Approach
2014 StandoutNobel
A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism
2008
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
FoxA1 directs the lineage and immunosuppressive properties of a novel regulatory T cell population in EAE and MS
2014
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins
2011
Human FOXP3+ Regulatory T Cell Heterogeneity and Function in Autoimmunity and Cancer
2019 StandoutNobel
In vivo 3′-to-5′ exoribonuclease targetomes of Streptococcus pyogenes
2018 StandoutNobel
Genetic and epigenetic basis of Treg cell development and function: from a FoxP3‐centered view to an epigenome‐defined view of natural Treg cells
2014 StandoutNobel
Regulatory T Cells and Human Disease
2020 StandoutNobel
Nonoverlapping roles of PD-1 and FoxP3 in maintaining immune tolerance in a novel autoimmune pancreatitis mouse model
2016 StandoutNobel
The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations
2014
Lineage stability and phenotypic plasticity of Foxp3+ regulatory T cells
2014
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
Linking disease associations with regulatory information in the human genome
2012
Molecular control of regulatory T cell development and function
2017 StandoutNobel
Genetic and epigenetic variation in the lineage specification of regulatory T cells
2015
Clustering to identify RNA conformations constrained by secondary structure
2011 StandoutNobel
Controversies concerning thymus‐derived regulatory T cells: fundamental issues and a new perspective
2015
Riboswitches: Emerging Themes in RNA Structure and Function
2008
Control of foreign Ag‐specific Ab responses by Treg and Tfr
2020 StandoutNobel
Expanding APEX2 Substrates for Proximity‐Dependent Labeling of Nucleic Acids and Proteins in Living Cells
2019
Proenkephalin+regulatory T cells expanded by ultraviolet B exposure maintain skin homeostasis with a healing function
2020 StandoutNobel
Epigenetic conversion of conventional T cells into regulatory T cells by CD28 signal deprivation
2020 StandoutNobel
The Mononuclear Molybdenum Enzymes
2014 Standout
Treg-expressed CTLA-4 depletes CD80/CD86 by trogocytosis, releasing free PD-L1 on antigen-presenting cells
2021 StandoutNobel
Helper T‐cell identity and evolution of differential transcriptomes and epigenomes
2013
A high-coverage Neandertal genome from Chagyrskaya Cave
2020 StandoutNobel
A distinct subpopulation of CD25−T-follicular regulatory cells localizes in the germinal centers
2017 StandoutNobel
Mitochondrial activation chemicals synergize with surface receptor PD-1 blockade for T cell-dependent antitumor activity
2017 StandoutNobel
Differential control of human Treg and effector T cells in tumor immunity by Fc-engineered anti–CTLA-4 antibody
2018 StandoutNobel
Works of Shane Neph being referenced
The Human Mitochondrial Transcriptome
2011
A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
2007
Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
2013
Personal and population genomics of human regulatory variation
2012
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
2007
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
2009
Foxp3 Exploits a Pre-Existent Enhancer Landscape for Regulatory T Cell Lineage Specification
2012
Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
2012
BEDOPS: high-performance genomic feature operations
2012