Citation Impact
Citing Papers
Metabolic dependencies drive species co-occurrence in diverse microbial communities
2015
Involvement of a novel transcriptional activator and small RNA in post‐transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system
2004
The Genetic Basis for Bacterial Mercury Methylation
2013 StandoutScience
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
2013 Standout
Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality
2020 StandoutNobel
Formation of propionate and butyrate by the human colonic microbiota
2016 Standout
Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
2014
Applications of genome‐scale metabolic reconstructions
2009
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Constraints-based genome-scale metabolic simulation for systems metabolic engineering
2009
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
2015 Standout
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
A large synthetic peptide and phosphopeptide reference library for mass spectrometry–based proteomics
2013
Small RNAs establish gene expression thresholds
2008
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
2009 StandoutNature
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
2012 Standout
RNA-based recognition and targeting: sowing the seeds of specificity
2017 StandoutNobel
Synthetic Molecular Motors and Mechanical Machines
2006 Standout
Experimental approaches for the discovery and characterization of regulatory small RNA
2009
O-Pair Search with MetaMorpheus for O-glycopeptide characterization
2020 StandoutNobel
The abc's (and xyz's) of peptide sequencing
2004
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
2015 Standout
Hydrolytic function of Exo1 in mammalian mismatch repair
2014 StandoutNobel
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
2011 StandoutNatureNobel
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
2012 Standout
Biofilms: an emergent form of bacterial life
2016 Standout
RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data
2011
Electron transfer in syntrophic communities of anaerobic bacteria and archaea
2009
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods
2012
Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases
2004
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
2011 Standout
Quantitative Mass Spectrometry Reveals Dynamics of Factor-inhibiting Hypoxia-inducible Factor-catalyzed Hydroxylation
2011 StandoutNobel
Toward a Human Blood Serum Proteome
2002
The mammalian transcriptome and the function of non-coding DNA sequences.
2004
The primary transcriptome of the major human pathogen Helicobacter pylori
2010 StandoutNature
The quantitative significance of Syntrophaceae and syntrophic partnerships in methanogenic degradation of crude oil alkanes
2011
Copper-Zinc Superoxide Dismutase (SOD1) Is Released by Microglial Cells and Confers Neuroprotection against 6-OHDA Neurotoxicity
2012 Standout
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
Proteomics: the first decade and beyond
2003
The Small RNA IstR Inhibits Synthesis of an SOS-Induced Toxic Peptide
2004
Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping
2005
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
What is flux balance analysis?
2010 Standout
RNA-Seq: a revolutionary tool for transcriptomics
2008 Standout
Dynamic control of chirality and self-assembly of double-stranded helicates with light
2016 StandoutNobel
Ultralow‐Fouling, Functionalizable, and Hydrolyzable Zwitterionic Materials and Their Derivatives for Biological Applications
2009 Standout
Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs
2007 Standout
Adaptation in CRISPR-Cas Systems
2016 StandoutNobel
Evolution and Functions of Long Noncoding RNAs
2009 Standout
Syntrophy in anaerobic global carbon cycles
2009
Recent developments in public proteomic MS repositories and pipelines
2009
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Mapping and quantifying mammalian transcriptomes by RNA-Seq
2008 Standout
Molecular eco-systems biology: towards an understanding of community function
2008
Transcriptional interference – a crash course
2005
Long noncoding RNAs: functional surprises from the RNA world
2009 Standout
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
2008 Standout
Genome-scale models of bacterial metabolism: reconstruction and applications
2008
Genome Regulation by Long Noncoding RNAs
2012 Standout
Review: The Use of Accurate Mass Tags for High-Throughput Microbial Proteomics
2002
The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
2008 StandoutScience
Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
2002 Standout
Dye-Sensitized Solar Cells
2010 Standout
Optimized Protocol for On-Target Phosphopeptide Enrichment Prior to Matrix-Assisted Laser Desorption−Ionization Mass Spectrometry Using Mesoporous Titanium Dioxide
2010
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
2005
Mass spectrometry-based proteomics
2003 StandoutNature
Non-linear transduction strategies for chemo/biosensing on small length scales
2005 StandoutNobel
Structure, variation, and assembly of the root-associated microbiomes of rice
2015 Standout
High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system
2011
The Small RNA Regulators ofEscherichia coli: Roles and Mechanisms
2004
Mechanisms of Competition in Biofilm Communities
2015
Lookup Peaks: A Hybrid of de Novo Sequencing and Database Search for Protein Identification by Tandem Mass Spectrometry
2007
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
2010
Upregulation of the Phthiocerol Dimycocerosate Biosynthetic Pathway by Rifampin-Resistant,rpoBMutant Mycobacterium tuberculosis
2012 StandoutNobel
Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments
2010
Global Identification of Human Transcribed Sequences with Genome Tiling Arrays
2004 Science
Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli
2009
Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
2011
A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
2003 Standout
Predominant Release of Lysosomal Enzymes by Newborn Rat Microglia After LPS Treatment Revealed by Proteomic Studies
2008
Prediction of enzymatic pathways by integrative pathway mapping
2018
Chemical Glycoproteomics
2016 StandoutNobel
Effect of the Deletion of qmoABC and the Promoter-Distal Gene Encoding a Hypothetical Protein on Sulfate Reduction in Desulfovibrio vulgaris Hildenborough
2010
Mass Spectrometry and Protein Analysis
2006 StandoutScience
Works of Sergey Stolyar being referenced
The Electron Transfer System of Syntrophically Grown Desulfovibrio vulgaris
2009
Metabolic modeling of a mutualistic microbial community
2007
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
2002
Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria
2013
Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis
2002
Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis
2002
Response of Desulfovibrio vulgaris to Alkaline Stress
2007