Citation Impact
Citing Papers
The Spatial Organization of the Human Genome
2013
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
2021 StandoutNobel
Iterative random forests to discover predictive and stable high-order interactions
2018
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements
2013
Natural selection interacts with recombination to shape the evolution of hybrid genomes
2018 Science
Denisovan ancestry and population history of early East Asians
2020 StandoutScienceNobel
High burden and pervasive positive selection of somatic mutations in normal human skin
2015 StandoutScience
Resurrecting Surviving Neandertal Lineages from Modern Human Genomes
2014 Science
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
Network-based stratification of tumor mutations
2013
Genetic and Epigenetic Determinants of Neurogenesis and Myogenesis
2012
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Structural perspective of cooperative transcription factor binding
2017
Single-cell chromatin accessibility reveals principles of regulatory variation
2015 Nature
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia
2017 StandoutNobel
Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
2013
The Functional Consequences of Variation in Transcription Factor Binding
2014
The genomic landscape of Neanderthal ancestry in present-day humans
2014 StandoutNatureNobel
Multi-omics approaches to disease
2017
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
2011
Reciprocal regulation of the Il9 locus by counteracting activities of transcription factors IRF1 and IRF4
2017 StandoutNobel
Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding
2012
Identification of Early Replicating Fragile Sites that Contribute to Genome Instability
2013
Histone acetylation controls the inactive X chromosome replication dynamics
2011
Cancer Epigenetics: From Mechanism to Therapy
2012 Standout
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
2014 Standout
The Human Transcription Factors
2018 Standout
Regulatory Enhancer–Core-Promoter Communication via Transcription Factors and Cofactors
2016
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Personal and population genomics of human regulatory variation
2012
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
Human Genome Replication Proceeds through Four Chromatin States
2013
Mapping and analysis of chromatin state dynamics in nine human cell types
2011 StandoutNature
Current Understanding of the Mechanisms Underlying Immune Evasion From PD-1/PD-L1 Immune Checkpoint Blockade in Head and Neck Cancer
2020
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
Metazoan MicroRNAs
2018 Standout
Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
2011
Pioneer transcription factors: establishing competence for gene expression
2011
Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins
2011
Role of the gut microbiota in nutrition and health
2018 Standout
NCBI GEO: archive for functional genomics data sets—update
2012 Standout
The major genetic risk factor for severe COVID-19 is inherited from Neanderthals
2020 StandoutNatureNobel
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
Combinatorial function of transcription factors and cofactors
2017
Comprehensive identification and analysis of human accelerated regulatory DNA
2015
Transcription factors: from enhancer binding to developmental control
2012 Standout
The role of senescent cells in ageing
2014 StandoutNature
Absence of a simple code: how transcription factors read the genome
2014
Synonymous Mutations Frequently Act as Driver Mutations in Human Cancers
2014
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
2012
Field-resolved infrared spectroscopy of biological systems
2020 StandoutNatureNobel
Topological domains in mammalian genomes identified by analysis of chromatin interactions
2012 StandoutNature
Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers
2012
Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
2010
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants
2020
Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment
2014 Standout
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
The Human Condition—A Molecular Approach
2014 StandoutNobel
Spatial partitioning of the regulatory landscape of the X-inactivation centre
2012 StandoutNature
CLOCK:BMAL1 is a pioneer-like transcription factor
2014 StandoutNobel
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Enhancer transcripts mark active estrogen receptor binding sites
2013
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
2013 Standout
Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
2015 StandoutNobel
Integrating one-dimensional and three-dimensional maps of genomes
2010
Dynamics of CRISPR-Cas9 genome interrogation in living cells
2015 StandoutScienceNobel
Disentangling the Many Layers of Eukaryotic Transcriptional Regulation
2012
Head and Neck Cancer
2020 Standout
Nonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genes
2012 StandoutNobel
Histone variant macroH2A confers resistance to nuclear reprogramming
2011 StandoutNobel
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
Holo-TFIID controls the magnitude of a transcription burst and fine-tuning of transcription
2013
Chromatin organization is a major influence on regional mutation rates in human cancer cells
2012 Nature
Definitions, methods, and applications in interpretable machine learning
2019 Standout
A high-coverage Neandertal genome from Chagyrskaya Cave
2020 StandoutNobel
microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart
2013
Works of Sean Thomas being referenced
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
2011
A Temporal Chromatin Signature in Human Embryonic Stem Cells Identifies Regulators of Cardiac Development
2012
Multi-modality analysis supports APOBEC as a major source of mutations in head and neck squamous cell carcinoma
2017
Dynamic reprogramming of chromatin accessibility during Drosophilaembryo development
2011
Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development
2011
Acetylation of RNA Polymerase II Regulates Growth-Factor-Induced Gene Transcription in Mammalian Cells
2013
Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis
2016
BET bromodomain inhibition suppresses innate inflammatory and profibrotic transcriptional networks in heart failure
2017
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
2009
BEDOPS: high-performance genomic feature operations
2012
Combinatorial control of temporal gene expression in the Drosophila wing by enhancers and core promoters
2012
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila
2012
RNA‐seq Data: Challenges in and Recommendations for Experimental Design and Analysis
2014