Citation Impact
Citing Papers
Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock
2023 StandoutNobel
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
Exploring the structural origins of cryptic sites on proteins
2018
Rapid and automated design of two-component protein nanomaterials using ProteinMPNN
2024 StandoutNobel
Protein oligomer modeling guided by predicted interchain contacts in CASP14
2021 StandoutNobel
Four-component protein nanocages designed by programmed symmetry breaking
2024 StandoutNatureNobel
Molecular Rationale behind the Differential Substrate Specificity of Bacterial RND Multi-Drug Transporters
2017
ColabFold: making protein folding accessible to all
2022 Standout
De novo design of allosterically switchable protein assemblies
2024 StandoutNatureNobel
Prediction of residue-residue contact matrix for protein-protein interaction with Fisher score features and deep learning
2016
Software for molecular docking: a review
2017
The ClusPro web server for protein–protein docking
2017 Standout
Improving 10-deacetylbaccatin III-10-β-O-acetyltransferase catalytic fitness for Taxol production
2017
Cryptic binding sites on proteins: definition, detection, and druggability
2018
Structure-based prediction of protein allostery
2017
CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites
2016
Retention of antibiotic activity against resistant bacteria harbouring aminoglycoside-N-acetyltransferase enzyme by adjuvants: a combination of in-silico and in-vitro study
2020
Generation and Characterization of Small Single Domain Antibodies Inhibiting Human Tumor Necrosis Factor Receptor 1
2014
ClusPro FMFT-SAXS: Ultra-fast Filtering Using Small-Angle X-ray Scattering Data in Protein Docking
2018
Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites
2021 StandoutNobel
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
2015 Standout
Drug repurposing: progress, challenges and recommendations
2018 Standout
What method to use for protein–protein docking?
2019
Reprogramming Acyl Carrier Protein Interactions of an Acyl-CoA Promiscuous trans-Acyltransferase
2014
Applications of contact predictions to structural biology
2017 StandoutNobel
Structure-Based Virtual Screening for Drug Discovery: Principles, Applications and Recent Advances
2014
Peptiderive server: derive peptide inhibitors from protein–protein interactions
2016
Lysosome-targeting chimaeras for degradation of extracellular proteins
2020 StandoutNatureNobel
Structure-Based Analysis of Cryptic-Site Opening
2019
Multidrug efflux pumps: structure, function and regulation
2018 Standout
ClusPro-DC: Dimer Classification by the Cluspro Server for Protein–Protein Docking
2016
Improvements, trends, and new ideas in molecular docking: 2012–2013 in review
2015
Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes
2018
CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge
2015 StandoutNobel
Integrative computational modeling of protein interactions
2014
The Impact of Side-Chain Packing on Protein Docking Refinement
2015
Addressing recent docking challenges: A hybrid strategy to integrate template‐based and free protein‐protein docking
2016
Molecular Docking and Structure-Based Drug Design Strategies
2015 Standout
Molecular basis for multimerization in the activation of the epidermal growth factor receptor
2016
Protein Ensemble Generation Through Variational Autoencoder Latent Space Sampling
2024 StandoutNobel
Glycosaminoglycan-based hydrogels capture inflammatory chemokines and rescue defective wound healing in mice
2017
Target-templated de novo design of macrocyclic d -/l -peptides: discovery of drug-like inhibitors of PD-1
2021
Functional Hydrogels as Wound Dressing to Enhance Wound Healing
2021 Standout
Automatic structure prediction of oligomeric assemblies using Robetta in CASP12
2017 StandoutNobel
Accounting for observed small angle X‐ray scattering profile in the protein–protein docking server cluspro
2015
Bacterial Antibiotic Resistance: The Most Critical Pathogens
2021 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Molecular Docking: Challenges, Advances and its Use in Drug Discovery Perspective
2018 Standout
Accounting for pairwise distance restraints in FFT-based protein–protein docking
2016
Plant Secondary Metabolites as Anticancer Agents: Successes in Clinical Trials and Therapeutic Application
2018 Standout
Predicting Protein–Protein Interactions from the Molecular to the Proteome Level
2016
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
2019 StandoutNobel
Small-Angle X-ray Scattering Data in Combination with RosettaDock Improves the Docking Energy Landscape
2017
Works of Scott E. Mottarella being referenced
Protein–protein docking by fast generalized Fourier transforms on 5D rotational manifolds
2016
Docking Server for the Identification of Heparin Binding Sites on Proteins
2014
FTMAP: extended protein mapping with user-selected probe molecules
2012
The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins
2015
How good is automated protein docking?
2013
New additions to the C lusP ro server motivated by CAPRI
2016
Energy Minimization on Manifolds for Docking Flexible Molecules
2015