Citation Impact
Citing Papers
2014 ESC Guidelines on diagnosis and management of hypertrophic cardiomyopathy
2014 Standout
ShinyGO: a graphical gene-set enrichment tool for animals and plants
2019 Standout
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
2014
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Increasing homogeneity in global food supplies and the implications for food security
2014 Standout
Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene
2007 Standout
The Evolution and Future of Earth’s Nitrogen Cycle
2010 StandoutScience
Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale
2015
Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]
2011
The differential expression patterns of paralogs in response to stresses indicate expression and sequence divergences
2020
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
2009
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2000 StandoutNature
Exploring the rice dispensable genome using a metagenome-like assembly strategy
2015
Rice husks as a sustainable source of nanostructured silicon for high performance Li-ion battery anodes
2013
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
2010
The molecular hallmarks of epigenetic control
2016 Standout
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
2007
Genomics and the Contrasting Dynamics of Annual and Perennial Domestication
2015
PLAZA 3.0: an access point for plant comparative genomics
2014
Transposable elements and the epigenetic regulation of the genome
2007
The advantages and disadvantages of being polyploid
2005 Standout
Rewiring of the Fruit Metabolome in Tomato Breeding
2018 Standout
The history of cancer epigenetics
2004 Standout
Higher Copy Numbers of the Potato RB Transgene Correspond to Enhanced Transcript and Late Blight Resistance Levels
2009
DNA methylation patterns and epigenetic memory
2002 Standout
Epigenetics and the environment: emerging patterns and implications
2012 Standout
Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage
2011
Patterns and processes in crop domestication: an historical review and quantitative analysis of 203 global food crops
2012 Standout
De novo domestication of wild tomato using genome editing
2018 Standout
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
2008 Standout
Genome-wide prediction of imprinted murine genes
2005
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
Chromosome painting in Arabidopsis thaliana
2001
Polyploid genome of Camelina sativarevealed by isolation of fatty acid synthesis genes
2010
De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification
2011
Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data
2016
FISH-mapping of rDNAs andArabidopsisBACs on pachytene complements of selectedBrassicas
2002
Field testing, gene flow assessment and pre-commercial studies on transgenic Solanum tuberosum spp. tuberosum (cv. Spunta) selected for PVY resistance in Argentina
2011
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
2011 Nature
The Genomic Signature of Crop-Wild Introgression in Maize
2013
Hypomethylation and hypermethylation of DNA in Wilms tumors
2002
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
2012 Standout
A gene expression map of Arabidopsis thaliana development
2005 Standout
A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics
2013 Standout
Methylation matters
2001
DNA methylation in cancer: too much, but also too little
2002
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
2006 StandoutNature
Reactive oxygen species homeostasis and signalling during drought and salinity stresses
2009 Standout
Genomics of the origin and evolution of Citrus
2018 StandoutNature
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
Plant pathogens and integrated defence responses to infection
2001 StandoutNature
Next generation sequencing in cardiovascular diseases
2012
Complete inventory of soybean NAC transcription factors: Sequence conservation and expression analysis uncover their distinct roles in stress response
2009
DNA methylation landscapes: provocative insights from epigenomics
2008 Standout
Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery
2002
The pangenome of an agronomically important crop plant Brassica oleracea
2016 Standout
BAC 'landing' on chromosomes of Brachypodium distachyon for comparative genome alignment
2007
Epigenetic Regulation in Plants
2014
Using next‐generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences
2011 Standout
SyMAP: A system for discovering and viewing syntenic regions of FPC maps
2006
Genomics of gene banks: A case study in rice
2012
Seed dormancy and the control of germination
2006 Standout
The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway
2007 StandoutNobel
Chromosome triplication found across the tribe Brassiceae
2005 Standout
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
2013 Standout
Epigenetic contribution to stress adaptation in plants
2011
The genomic ecosystem of transposable elements in maize
2021
Evolution of crop species: genetics of domestication and diversification
2013 Standout
Efficient algorithms and software for detection of full-length LTR retrotransposons
2005
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
2009 Standout
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
2007 Standout
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
2014 Standout
Integrated Cytogenetic Map of Chromosome Arm 4S of A. thaliana
2000
Assessing the level of collinearity betweenArabidopsis thalianaandBrassica napusforA. thalianachromosome 5
2002
Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels
2016
Environmental epigenomics and disease susceptibility
2007 Standout
Early agricultural pathways: moving outside the ‘core area’ hypothesis in Southwest Asia
2011
A call for benchmarking transposable element annotation methods
2015
Recent progress in chromosome painting of Arabidopsis and related species
2003
A unified classification system for eukaryotic transposable elements
2007 Standout
Archaeological and genetic insights into the origins of domesticated rice
2014
The map-based sequence of the rice genome
2005 StandoutNature
Helitrons , the Eukaryotic Rolling-circle Transposable Elements
2015
Biological nitrification inhibition (BNI)-Is there potential for genetic interventions in the Triticeae?
2009
Pivoting the Plant Immune System from Dissection to Deployment
2013 StandoutScience
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
2017
The Centromere Paradox: Stable Inheritance with Rapidly Evolving DNA
2001 Science
Advances in BAC-Based Physical Mapping and Map Integration Strategies in Plants
2012
EFFICIENT ALGORITHMS AND SOFTWARE FOR DETECTION OF FULL-LENGTH LTR RETROTRANSPOSONS
2006
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
A Comprehensive Rice Transcript Map Containing 6591 Expressed Sequence Tag Sites
2002
Sequencing of plant genomes – a review
2015
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa , document novel gene space of aus and indica
2014
Alignment of the Genomes ofBrachypodium distachyonand Temperate Cereals and Grasses Using Bacterial Artificial Chromosome Landing With Fluorescencein SituHybridization
2006
DNA Transposons and the Evolution of Eukaryotic Genomes
2007
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
2013 Standout
Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice
2006 Standout
Population-based resequencing analysis of wild and cultivated barley revealed weak domestication signal of selection and bottleneck in theRrs2scald resistance gene region
2012
Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume
2016
Assessing genome assembly quality using the LTR Assembly Index (LAI)
2018
Alloy Negative Electrodes for Li-Ion Batteries
2014 Standout
Revolutions in agriculture chart a course for targeted breeding of old and new crops
2019 Science
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
2011
A Single Amino Acid Difference Distinguishes Resistant and Susceptible Alleles of the Rice Blast Resistance Gene Pi-ta
2000
The physiology of plant responses to drought
2020 StandoutScience
Beyond the Arabidopsis Genome: Opportunities for Comparative Genomics
2002
Plant Retrotransposons
1999
Bayesian Evolutionary Analysis with BEAST
2015
Analysis of Intraspecies Diversity in Wheat and Barley Genomes Identifies Breakpoints of Ancient Haplotypes and Provides Insight into the Structure of Diploid and Hexaploid Triticeae Gene Pools
2008
Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development
2011
Artificial selection for determinate growth habit in soybean
2010
Works of Scott A. Jackson being referenced
Molecular evidence for a single evolutionary origin of domesticated rice
2011
Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing
2007
Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genusOryza
2007
Next-generation sequencing technologies and their implications for crop genetics and breeding
2009
Orthologous Comparisons of the Hd1 Region across Genera Reveal Hd1 Gene Lability within Diploid Oryza Species and Disruptions to Microsynteny in Sorghum
2010
Palaeogenomics of plants: synteny-based modelling of extinct ancestors
2010
A new approach for annotation of transposable elements using small RNA mapping
2015
Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis , a wild relative of rice
2006
Breeding crops to feed 10 billion
2019
Genomic and expression plasticity of polyploidy
2009
Plant centromere organization: a dynamic structure with conserved functions
2007
Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
2010
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
2009
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
2008
The Oryza Map Alignment Project: The Golden Path to Unlocking the Genetic Potential of Wild Rice Species
2005
Phylogeography of Asian wild rice, Oryza rufipogon: a genome‐wide view
2012
A Highly Conserved, Small LTR Retrotransposon that Preferentially Targets Genes in Grass Genomes
2012
Defining the Transcriptome Assembly and Its Use for Genome Dynamics and Transcriptome Profiling Studies in Pigeonpea (Cajanus cajan L.)
2011
Evolutionary conservation, diversity and specificity of LTR‐retrotransposons in flowering plants: insights from genome‐wide analysis and multi‐specific comparison
2010
Preparation of Samples for Comparative Studies of Plant Chromosomes Using In Situ Hybridization Methods
2005
The Future of Rice Genomics: Sequencing the Collective Oryza Genome
2010
Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean
2014
Cloning and characterization of a centromere-specific repetitive DNA element from Sorghum bicolor
1998
Molecular and Chromosomal Evidence for Allopolyploidy in Soybean
2009
Crossability between cultivated and wild tuber-and non-tuber-bearing Solanums
1999
The fate of duplicated genes in a polyploid plant genome
2012
Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region fromPhaseolus vulgaris
2010
The First 50 Plant Genomes
2013
Comparative Fluorescence in Situ Hybridization Mapping of a 431-kb Arabidopsis thaliana Bacterial Artificial Chromosome Contig Reveals the Role of Chromosomal Duplications in the Expansion of the Brassica rapa Genome
2000
Dynamic Evolution ofOryzaGenomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set
2008
Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis
2011
Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents
2010
Identification of differential methylation of the WT1 antisense regulatory region and relaxation of imprinting in Wilms' tumor.
2000
Application of fiber-FISH in physical mapping of <i>Arabidopsis thaliana</i>
1998
The Oryza BAC resource: a genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives
2010
Comparative Physical Mapping Between Oryza sativa (AA Genome Type) and O. punctata (BB Genome Type)
2007
Rice ( Oryza sativa ) centromeric regions consist of complex DNA
1998
Three Sequenced Legume Genomes and Many Crop Species: Rich Opportunities for Translational Genomics
2009
Retrotransposon-Related DNA Sequences in the Centromeres of Grass Chromosomes
1998