Sasha Ames

Improved metagenomic analysis with Kraken 2

Kraken: ultrafast metagenomic sequence classification using exact alignments

Whole metagenome profiles of particulates collected from the International Space Station

An evaluation of the accuracy and speed of metagenome analysis tools

Sequencing nothing: Exploring failure modes of nanopore sensing and implications for life detection

Host genetic variation impacts microbiome composition across human body sites

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers

Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity

Mash: fast genome and metagenome distance estimation using MinHash

Fast and sensitive taxonomic classification for metagenomics with Kaiju

KrakenUniq: confident and fast metagenomics classification using unique k-mer counts

Sensitive protein alignments at tree-of-life scale using DIAMOND

Toward Accurate and Quantitative Comparative Metagenomics

Gut microbiota, metabolites and host immunity

Genetic approach towards a vaccine against malaria

A Metagenomic Approach to Cyanobacterial Genomics

Cyanobacterial blooms

Nucleic Acid Extraction and Sequencing from Low-Biomass Synthetic Mars Analog Soils for In Situ Life Detection

The Higher Education Sustainability through Virtual Laboratories: The Spanish University as Case of Study

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

Spaced seeds improvek-mer-based metagenomic classification

Using populations of human and microbial genomes for organism detection in metagenomes

Scalable metagenomic taxonomy classification using a reference genome database