Citation Impact
Citing Papers
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
2012 Standout
Organic Cation Transporters Are Determinants of Oxaliplatin Cytotoxicity
2006
Global phosphorylation analysis of β-arrestin–mediated signaling downstream of a seven transmembrane receptor (7TMR)
2010 StandoutNobel
Identification of noninvasive imaging surrogates for brain tumor gene-expression modules
2008
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
2009 StandoutScience
A drug-controllable tag for visualizing newly synthesized proteins in cells and whole animals
2008 StandoutNobel
Conserved N-terminal cysteine dioxygenases transduce responses to hypoxia in animals and plants
2019 StandoutScienceNobel
Epigenetic regulation of hypoxic sensing disrupts cardiorespiratory homeostasis
2012 StandoutNobel
Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)
2006
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)
2005
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
2009 Standout
From genes to functional classes in the study of biological systems
2007
FUNC: a package for detecting significant associations between gene sets and ontological annotations
2007 StandoutNobel
Gene ontology analysis for RNA-seq: accounting for selection bias
2010 Standout
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Hallmarks of Cancer: The Next Generation
2011 Standout
GOToolBox: functional analysis of gene datasets based on Gene Ontology
2004
Comparing functional annotation analyses with Catmap
2004
GOFFA: Gene Ontology For Functional Analysis – A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data
2006
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
2008 StandoutNature
PAGE: Parametric Analysis of Gene Set Enrichment
2005
FACT – a framework for the functional interpretation of high-throughput experiments
2005
Bioorthogonal Chemistry: Fishing for Selectivity in a Sea of Functionality
2009 StandoutNobel
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
2004
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
2007
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
2006
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
2007
Major Molecular Differences between Mammalian Sexes Are Involved in Drug Metabolism and Renal Function
2004
Inflammation and metabolic disorders
2006 StandoutNature
Shotgun Glycopeptide Capture Approach Coupled with Mass Spectrometry for Comprehensive Glycoproteomics
2006
Regional Patterns of Gene Expression in Human and Chimpanzee Brains
2004 StandoutNobel
Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma
2005 StandoutNature
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
2004
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
GOAL: automated Gene Ontology analysis of expression profiles
2004
Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps
2011
The genomic landscape of Neanderthal ancestry in present-day humans
2014 StandoutNatureNobel
GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists
2005
Pathways to the analysis of microarray data
2005
A genome-wide comparison of recent chimpanzee and human segmental duplications
2005 StandoutNatureNobel
Cancer drug resistance: an evolving paradigm
2013 Standout
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
2008 Standout
The Gene Ontology Categorizer
2004
Identifying biological themes within lists of genes with EASE
2003 Standout
Significance, detection and markers of disseminated breast cancer cells
2006
GeneTools – application for functional annotation and statistical hypothesis testing
2006
Anatomical Profiling of Nuclear Receptor Expression Reveals a Hierarchical Transcriptional Network
2006
Absolute quantification of somatic DNA alterations in human cancer
2012
JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information
2006
Targeting multidrug resistance in cancer
2006 Standout
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
Breast cancer genomes — form and function
2010
Uncovering the overlapping community structure of complex networks in nature and society
2005 StandoutNature
Gene expression profiling of choline-deprived neural precursor cells isolated from mouse brain
2004
WebGestalt: an integrated system for exploring gene sets in various biological contexts
2005
Immunity, Inflammation, and Cancer
2010 Standout
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data
2008
Enrichment or depletion of a GO category within a class of genes: which test?
2006
Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments
2004
Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs
2010
L2L: a simple tool for discovering the hidden significance in microarray expression data
2005
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
2005 Standout
GO-2D: identifying 2-dimensional cellular-localized functional modules in Gene Ontology
2007
GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
2004 Standout
Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
2006 Standout
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
2008
Discovery and saturation analysis of cancer genes across 21 tumour types
2014 StandoutNature
Lysosome-targeting chimaeras for degradation of extracellular proteins
2020 StandoutNatureNobel
GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining
2004
The NCI60 human tumour cell line anticancer drug screen
2006 Standout
Topoisomerase I inhibitors: camptothecins and beyond
2006 Standout
Cancer-related inflammation, the seventh hallmark of cancer: links to genetic instability
2009 Standout
The PRISMA Statement for Reporting Systematic Reviews and Meta-Analyses of Studies That Evaluate Health Care Interventions: Explanation and Elaboration
2009 Standout
Apoptotic Topoisomerase I-DNA Complexes Induced by Staurosporine-mediated Oxygen Radicals
2004
Peptidic degron for IMiD-induced degradation of heterologous proteins
2019 StandoutNobel
Transcriptional neoteny in the human brain
2009 StandoutNobel
Gene Class expression: analysis tool of Gene Ontology terms with gene expression data.
2006
Ontological analysis of gene expression data: current tools, limitations, and open problems
2005
Decrease in topoisomerase I is responsible for activation-induced cytidine deaminase (AID)-dependent somatic hypermutation
2011 StandoutNobel
Pharmacological and surgical treatment of obesity.
2004
A Perspective on Cancer Cell Metastasis
2011 StandoutScience
Modeling hepatitis C virus infection using human induced pluripotent stem cells
2012 StandoutNobel
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
AID-induced decrease in topoisomerase 1 induces DNA structural alteration and DNA cleavage for class switch recombination
2009 StandoutNobel
cis -Diammine(pyridine)chloroplatinum(II), a monofunctional platinum(II) antitumor agent: Uptake, structure, function, and prospects
2008 StandoutNobel
Hypoxia promotes IL-32 expression in myeloma cells, and high expression is associated with poor survival and bone loss
2017
Chemosensitivity profile of cancer cell lines and identification of genes determining chemosensitivity by an integrated bioinformatical approach using cDNA arrays
2005
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
2006 Standout
CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology
2004
GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms
2004
Analyzing gene expression data in terms of gene sets: methodological issues
2007
Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays
2003
Identification of Chemoresistance-Related Cell-Surface Glycoproteins in Leukemia Cells and Functional Validation of Candidate Glycoproteins
2014
Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation
2012 StandoutNobel
A high-coverage Neandertal genome from Chagyrskaya Cave
2020 StandoutNobel
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
2009 Standout
Multiple Click-Selective tRNA Synthetases Expand Mammalian Cell-Specific Proteomics
2018 StandoutNobel
mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
2011 StandoutNobel
Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
2010 StandoutScienceNobel
Chemical Glycoproteomics
2016 StandoutNobel
CLUSTERING BIOLOGICAL ANNOTATIONS AND GENE EXPRESSION DATA TO IDENTIFY PUTATIVELY CO-REGULATED BIOLOGICAL PROCESSES
2006
Works of Samir Lababidi being referenced
Targeting Angiogenesis via a c-Myc/Hypoxia-Inducible Factor-1α–Dependent Pathway in Multiple Myeloma
2009
Chromosomal Instability Is Associated with Higher Expression of Genes Implicated in Epithelial-Mesenchymal Transition, Cancer Invasiveness, and Metastasis and with Lower Expression of Genes Involved in Cell Cycle Checkpoints, DNA Repair, and Chromatin Maintenance
2008
Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells
2003
GoMiner: a resource for biological interpretation of genomic and proteomic data
2003
Predicting drug sensitivity and resistance
2004
Apoptotic susceptibility of cancer cells selected for camptothecin resistance: gene expression profiling, functional analysis, and molecular interaction mapping.
2003 Nobel
Karyotypic complexity of the NCI-60 drug-screening panel.
2003
Effect of Low-Fat and/or Low-Energy Diets on Anthropometric Measures in Participants of the Women’s Diet Study
2002
Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel
2006