Citation Impact
Citing Papers
An enumerative algorithm for de novo design of proteins with diverse pocket structures
2020 StandoutNobel
A defined structural unit enables de novo design of small-molecule–binding proteins
2020 Science
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Exploiting conformational dynamics to modulate the function of designed proteins
2023 StandoutNobel
Hallucinating symmetric protein assemblies
2022 StandoutScienceNobel
Rapid and automated design of two-component protein nanomaterials using ProteinMPNN
2024 StandoutNobel
De novo protein design—From new structures to programmable functions
2024
Target-conditioned diffusion generates potent TNFR superfamily antagonists and agonists
2024 StandoutScienceNobel
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Recent advances in de novo protein design: Principles, methods, and applications
2021
Engineered receptors for soluble cellular communication and disease sensing
2024 StandoutNatureNobel
Predicting Peptide Structures in Native Proteins from Physical Simulations of Fragments
2009
Structural Similarities and Differences between Amyloidogenic and Non-Amyloidogenic Islet Amyloid Polypeptide (IAPP) Sequences and Implications for the Dual Physiological and Pathological Activities of These Peptides
2013
Development of an optimized activatable MMP-14 targeted SPECT imaging probe
2008
Exploring the conformational and reactive dynamics of biomolecules in solution using an extended version of the glycine reactive force field
2013
Multiscale modeling of biological functions
2011 StandoutNobel
Molecular Dynamics Simulation for All
2018 Standout
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers
2012 StandoutNobel
A Brief History of De Novo Protein Design: Minimal, Rational, and Computational
2021
Refined kinetic transition networks for the GB1 hairpin peptide
2009
Inclusion of Many-Body Effects in the Additive CHARMM Protein CMAP Potential Results in Enhanced Cooperativity of α-Helix and β-Hairpin Formation
2012
A backbone-centred energy function of neural networks for protein design
2022 Nature
Programmable synthetic receptors: the next-generation of cell and gene therapies
2024
Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours
2018 StandoutNobel
Improving the description of salt bridge strength and geometry in a Generalized Born model
2010
Protein sequence design with a learned potential
2022
De novo protein design by inversion of the AlphaFold structure prediction network
2023
The ReaxFF reactive force-field: development, applications and future directions
2016 Standout
Balance between α and β Structures in Ab Initio Protein Folding
2010
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
2015 Standout
Paradynamics: An Effective and Reliable Model for Ab Initio QM/MM Free-Energy Calculations and Related Tasks
2011 StandoutNobel
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
2012 Standout
Protein Ensemble Generation Through Variational Autoencoder Latent Space Sampling
2024 StandoutNobel
Molecular Simulation of ab Initio Protein Folding for a Millisecond Folder NTL9(1−39)
2010
Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules
2016 StandoutNobel
Evaluation and Optimization of Discrete State Models of Protein Folding
2012 StandoutNobel
CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data
2013 Standout
Computational design of mechanically coupled axle-rotor protein assemblies
2022 StandoutScienceNobel
Improved Generalized Born Solvent Model Parameters for Protein Simulations
2013
De novo design of small beta barrel proteins
2023 StandoutNobel
ff19SB: Amino-Acid-Specific Protein Backbone Parameters Trained against Quantum Mechanics Energy Surfaces in Solution
2019
Folding Simulations for Proteins with Diverse Topologies Are Accessible in Days with a Physics-Based Force Field and Implicit Solvent
2014
The Effect of Nanoparticle Size, Shape, and Surface Chemistry on Biological Systems
2012 Standout
An overview of the Amber biomolecular simulation package
2012 Standout
An effective Coarse‐grained model for biological simulations: Recent refinements and validations
2013 StandoutNobel
Protein Simulations with an Optimized Water Model: Cooperative Helix Formation and Temperature-Induced Unfolded State Collapse
2010
Works of Ryan Ritterson being referenced
Computational design of a modular protein sense-response system
2019 Science
A Test on Peptide Stability of AMBER Force Fields with Implicit Solvation
2008