Citation Impact
Citing Papers
STAR: ultrafast universal RNA-seq aligner
2012 Standout
The mucin-selective protease StcE enables molecular and functional analysis of human cancer-associated mucins
2019 StandoutNobel
Bacterial Community Variation in Human Body Habitats Across Space and Time
2009 StandoutScience
An enzymatic toolkit for selective proteolysis, detection, and visualization of mucin-domain glycoproteins
2020 StandoutNobel
Evolution of Mammals and Their Gut Microbes
2008 StandoutScience
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Psychometric scores and persistence of irritable bowel afterCampylobacter concisusinfection
2014
Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
2008
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 Standout
John Snow's legacy: epidemiology without borders
2013 StandoutNobel
Complete rpoB gene sequencing as a suitable supplement to DNA-DNA hybridization for bacterial species and genus delineation
2008
Structures of MLSBK Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance
2005 StandoutNobel
An ecological and evolutionary perspective on human–microbe mutualism and disease
2007 Nature
mRNA vaccines — a new era in vaccinology
2018 StandoutNobel
Quenched probes for highly specific detection of cellular RNAs
2005
Lateral gene transfer and the nature of bacterial innovation
2000 StandoutNature
Combinatorial and computational challenges for biocatalyst design
2001 StandoutNatureNobel
Molecular Evolution: Recombinant approaches for accessing biodiversity
1997
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
2016 Standout
Role of Emerging Campylobacter Species in Inflammatory Bowel Diseases
2014
Cancer Cell Metabolism: Warburg and Beyond
2008 Standout
Prokaryote and eukaryote evolvability
2003
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
2011 Standout
Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations
2012
High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy
2014 StandoutNobel
Dynamics and associations of microbial community types across the human body
2014 StandoutNature
Complete Genome Sequence of Enterohemorrhagic Eschelichia coli O157:H7 and Genomic Comparison with a Laboratory Strain K-12
2001
The Origin of the Haitian Cholera Outbreak Strain
2010
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Structure-guided mutagenesis of a mucin-selective metalloprotease from Akkermansia muciniphila alters substrate preferences
2022 StandoutNobel
Inferring genomic flux in bacteria
2008
Isolation of an autotrophic ammonia-oxidizing marine archaeon
2005 StandoutNature
Role of the Microbiota in Immunity and Inflammation
2014 Standout
TagA is a secreted protease of Vibrio cholerae that specifically cleaves mucin glycoproteins
2010
The adaptive evolution of virulence: a review of theoretical predictions and empirical tests
2015
Gene Switching and the Stability of Odorant Receptor Gene Choice
2004 StandoutNobel
Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study
2011
Pathogenic Escherichia coli
2004 Standout
Revealing the human mucinome
2022 StandoutNobel
Towards a prokaryotic genomic taxonomy
2004
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
Revisiting the Molecular Evolutionary History of Shigella spp.
2006
RNA-guided genetic silencing systems in bacteria and archaea
2012 StandoutNatureNobel
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
2012 Standout
Fine-scale phylogenetic architecture of a complex bacterial community
2004 Nature
Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology
2011
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
2008
The Common Structural Architecture of Shigella flexneri and Salmonella typhimurium Type Three Secretion Needles
2013 StandoutNobel
Whither vaccines?
2017
Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine
2006 Standout
Short-term and medium-term clinical outcomes of Campylobacter concisus infection
2012
A microbial symbiosis factor prevents intestinal inflammatory disease
2008 StandoutNature
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
2008
Commensal Bacteroides Species Induce Colitis in Host-Genotype-Specific Fashion in a Mouse Model of Inflammatory Bowel Disease
2011
A FRET‐Based Fluorogenic Phosphine for Live‐Cell Imaging with the Staudinger Ligation
2008 StandoutNobel
House cleaning, a part of good housekeeping
2005
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I
2000
The reach of the genome signature in prokaryotes.
2006
Discovery and Classification of Ecological Diversity in the Bacterial World: The Role of DNA Sequence Data
1997
Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria
2001 StandoutNatureNobel
23S rRNA base pair 2057–2611 determines ketolide susceptibility and fitness cost of the macrolide resistance mutation 2058A→G
2005 StandoutNobel
Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak
2011
Molecular Pathogenesis ofShigellaspp.: Controlling Host Cell Signaling, Invasion, and Death by Type III Secretion
2008
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.
2002 Standout
Characterization of Pic, a Secreted Protease of Shigella flexneri and Enteroaggregative Escherichia coli
1999
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
2007 Standout
Impact of regional climate change on human health
2005 StandoutNature
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
Historical Overfishing and the Recent Collapse of Coastal Ecosystems
2001 StandoutScience
Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars ofSalmonella entericasubsp.enterica
2011
Pathogenicity Islands of Shigella
2002
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
1998 Standout
Complete Genome Sequence and Comparative Genomics ofShigella flexneriSerotype 2a Strain 2457T
2003
CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection
2011
CRISPR-CasΦ from huge phages is a hypercompact genome editor
2020 StandoutScienceNobel
Molecular genetic relationships of the salmonellae
1996
Roles of mutation and recombination in the evolution of protein thermodynamics
2002 StandoutNobel
Vaginal Microbiome: Rethinking Health and Disease
2012
Microbial diversity in the deep sea and the underexplored “rare biosphere”
2006 Standout
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
2012 Standout
Emerging Infectious Diseases of Wildlife-- Threats to Biodiversity and Human Health
2000 StandoutScience
The Pangenome Structure ofEscherichia coli: Comparative Genomic Analysis ofE. coliCommensal and Pathogenic Isolates
2008
Global Epidemiology of Campylobacter Infection
2015 Standout
Global Climate and Infectious Disease: The Cholera Paradigm
1996 Science
Architecture and function of metallopeptidase catalytic domains
2013
Macrolide Resistance Conferred by Base Substitutions in 23S rRNA
2001
Complete Genome Sequence and Comparative Genome Analysis of Enteropathogenic Escherichia coli O127:H6 Strain E2348/69
2008
Climate Warming and Disease Risks for Terrestrial and Marine Biota
2002 StandoutScience
The Internal Transcribed Spacer Region, a New Tool for Use in Species Differentiation and Delineation of Systematic Relationships within the Campylobacter Genus
2010
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
1997 Standout
CadC Is the Preferential Target of a Convergent Evolution Driving Enteroinvasive Escherichia coli toward a Lysine Decarboxylase-Defective Phenotype
2003
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
2007 Standout
Recombination and the Population Structures of Bacterial Pathogens
2001
Social-Ecological Resilience to Coastal Disasters
2005 StandoutScience
Insights into the Environmental Resistance Gene Pool from the Genome Sequence of the Multidrug-Resistant Environmental Isolate Escherichia coli SMS-3-5
2008
Works of Ruiting Lan being referenced
Intraspecies variation in bacterial genomes: the need for a species genome concept
2000
The Prevalence and Polymorphisms of Zonula Occluden Toxin Gene in Multiple Campylobacter concisus Strains Isolated from Saliva of Patients with Inflammatory Bowel Disease and Controls
2013
Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis
2012
The colanic acid gene cluster ofSalmonella entericahas a complex history
2000
MULTICOMP: a program for preparing sequence data for phylogenetic analysis
1994
Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor
2010
Escherichia coli in disguise: molecular origins of Shigella
2002
Evolution of Seventh Cholera Pandemic and Origin of 1991 Epidemic, Latin America
2010
Gene transfer is a major factor in bacterial evolution
1996
Investigation of the Enteric Pathogenic Potential of Oral Campylobacter concisus Strains Isolated from Patients with Inflammatory Bowel Disease
2012
Population structure, origins and evolution of major Salmonella enterica clones
2009
Sex and virulence in Escherichia coli: an evolutionary perspective
2006 Standout
Molecular evolution in the gnd locus of Salmonella enterica.
1994
Insight into Evolution of Bordetella pertussis from Comparative Genomic Analysis: Evidence of Vaccine-Driven Selection
2010
When does a clone deserve a name? A perspective on bacterial species based on population genetics
2001
Multiple independent origins of Shigella clones ofEscherichia coliand convergent evolution of many of their characteristics
2000
Recombination between rRNA operons created most of the ribotype variation observed in the seventh pandemic clone of Vibrio cholerae
1998
Variation of the Ribosomal Operon 16S-23S Gene Spacer Region in Representatives of Salmonella enterica Subspecies
1998
Comparison of Two Major Forms of the Shigella Virulence Plasmid pINV: Positive Selection Is a Major Force Driving the Divergence
2003
Evolutionary Changes of the flhDC Flagellar Master Operon in Shigella Strains
2005
The sixth and seventh cholera pandemics are due to independent clones separately derived from environmental, nontoxigenic, non-O1 Vibrio cholerae
1995
Molecular Evolutionary Relationships of Enteroinvasive Escherichia coli and Shigella spp
2004
Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies
1997
Molecular Evolution of Large Virulence Plasmid in Shigella Clones and Enteroinvasive Escherichia coli
2001
Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over four continents and 41 years
1994
Comparison of Vibrio cholerae Pathogenicity Islands in Sixth and Seventh Pandemic Strains
2001
Evolutionary Relationships of Pathogenic Clones of Vibrio cholerae by Sequence Analysis of Four Housekeeping Genes
1999
Single-Nucleotide-Polymorphism Typing and Genetic Relationships of Salmonella enterica Serovar Typhi Isolates
2007