Citation Impact
Citing Papers
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
Nature of the protein universe
2009 StandoutNobel
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
The IMEx coronavirus interactome: an evolving map of Coronaviridae –host molecular interactions
2020
A genomic region associated with protection against severe COVID-19 is inherited from Neandertals
2021 StandoutNobel
Topological control of cytokine receptor signaling induces differential effects in hematopoiesis
2019 StandoutScienceNobel
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
2009 StandoutScience
Predicting protein–protein interactions in the context of protein evolution
2009
Expansive discovery of chemically diverse structured macrocyclic oligoamides
2024 StandoutScienceNobel
Improved pathogenicity prediction for rare human missense variants
2021
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Large‐scale survey and database of high affinity ligands for peptide recognition modules
2020
Disease candidate gene identification and prioritization using protein interaction networks
2009
Soluble expression of proteins correlates with a lack of positively-charged surface
2013
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data
2024
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
2020 Standout
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants
2021
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
2010 Standout
The Jpred 3 secondary structure prediction server
2008
Chromatin Modifications and Their Function
2007 Standout
Interaction networks as a tool to investigate the mechanisms of aging
2010
A paradigm shift in medicine: A comprehensive review of network-based approaches
2019
ConsensusPathDB: toward a more complete picture of cell biology
2010
PID: the Pathway Interaction Database
2008
Structure of the Type VI Secretion System Contractile Sheath
2015 StandoutNobel
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
JPred4: a protein secondary structure prediction server
2015
Histone H3 and H4 Ubiquitylation by the CUL4-DDB-ROC1 Ubiquitin Ligase Facilitates Cellular Response to DNA Damage
2006
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi
2009 Nature
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
HitPredict: a database of quality assessed protein–protein interactions in nine species
2010
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
2015
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Weighing in on ubiquitin: the expanding role of mass-spectrometry-based proteomics
2005
Global Identification of Modular Cullin-RING Ligase Substrates
2011
FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity
2021
PrePPI: a structure-informed database of protein–protein interactions
2012
Structures of Human Exonuclease 1 DNA Complexes Suggest a Unified Mechanism for Nuclease Family
2011 StandoutNobel
Ubiquitin-dependent regulation of COPII coat size and function
2012 StandoutNatureNobel
Systematic Evaluation of Molecular Networks for Discovery of Disease Genes
2018
ConsensusPathDB—a database for integrating human functional interaction networks
2008
AnimalTFDB: a comprehensive animal transcription factor database
2011
PIPs: human protein-protein interaction prediction database
2008
Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization
2013
Molecular chaperones in protein folding and proteostasis
2011 StandoutNature
CRISPR/Cas9-Based Engineering of the Epigenome
2017
A Cell-Penetrating Scorpion Toxin Enables Mode-Specific Modulation of TRPA1 and Pain
2019 StandoutNobel
Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
2012 StandoutNobel
Exploring protein-protein interactions at the proteome level
2022
The ConsensusPathDB interaction database: 2013 update
2012
Biophysical prediction of protein–peptide interactions and signaling networks using machine learning
2020
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
2008
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit
2017
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Understanding multicellular function and disease with human tissue-specific networks
2015
Specific Expression of VCY2 in Human Male Germ Cells and Its Involvement in the Pathogenesis of Male Infertility
2003
Network-based function prediction and interactomics: The case for metabolic enzymes
2010
Homing in: Mechanisms of Substrate Targeting by Protein Kinases
2018
The NetAge database: a compendium of networks for longevity, age-related diseases and associated processes
2010
Pathway and network analysis of cancer genomes
2015
Evaluating protein structures determined by structural genomics consortia
2006
SNOW, a web-based tool for the statistical analysis of protein–protein interaction networks
2009
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Progress of Structural Genomics Initiatives: An Analysis of Solved Target Structures
2005
Exploiting structure similarity in refinement: automated NCS and target-structure restraints inBUSTER
2012
HSP90 at the hub of protein homeostasis: emerging mechanistic insights
2010
Controlling protein assembly on inorganic crystals through designed protein interfaces
2019 StandoutNatureNobel
Global quantification of mammalian gene expression control
2011 StandoutNature
FunCoup 4: new species, data, and visualization
2017
Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models
2005
STRING 8--a global view on proteins and their functional interactions in 630 organisms
2008 Standout
IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks
2012
Role for protein–protein interaction databases in human genetics
2009
A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase
2020
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
2009 Standout
Next-Generation Machine Learning for Biological Networks
2018
Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21
2015 StandoutNobel
Growth of novel protein structural data
2007 StandoutNobel
Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes
2018
Genome-wide functional association networks: background, data & state-of-the-art resources
2019
The Tyrosine Kinase Negative Regulator c-Cbl as a RING-Type, E2-Dependent Ubiquitin-Protein Ligase
1999 Science
Structure of the STRA6 receptor for retinol uptake
2016 StandoutScienceNobel
HumanNet v3: an improved database of human gene networks for disease research
2021
Regulation of Receptor Fate by Ubiquitination of Activated β 2 -Adrenergic Receptor and β-Arrestin
2001 StandoutScienceNobel
XtalPred: a web server for prediction of protein crystallizability
2007
Ramshackle (Brwd3) promotes light-induced ubiquitylation of Drosophila Cryptochrome by DDB1-CUL4-ROC1 E3 ligase complex
2013 StandoutNobel
Molecular links between cellular senescence, longevity and age-related diseases – a systems biology perspective
2011
IMID: integrated molecular interaction database
2012
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis
2021
Protein NMR Structures Refined with Rosetta Have Higher Accuracy Relative to Corresponding X-ray Crystal Structures
2014 StandoutNobel
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks
2023 StandoutNobel
MatrixDB, a database focused on extracellular protein–protein and protein–carbohydrate interactions
2009
Clustering to identify RNA conformations constrained by secondary structure
2011 StandoutNobel
Solvent dramatically affects protein structure refinement
2008 StandoutNobel
Mobilization of LINE-1 retrotransposons is restricted by Tex19.1 in mouse embryonic stem cells
2017
The Impact of Structural Genomics: Expectations and Outcomes
2006 Science
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
2020
MicroRNA-Regulated Protein–Protein Interaction Networks: How Could They Help in Searching for Pro-Longevity Targets?
2010
Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans
2018
Discovery of a nucleocytoplasmic O-mannose glycoproteome in yeast
2015
Environmental robustness of the global yeast genetic interaction network
2021 Science
Complex Portal 2022: new curation frontiers
2021
IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species
2018
A yeast‐based complementation assay elucidates the functional impact of 200 missense variants in human PSAT1
2020
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
2012 StandoutNobel
Protein structure prediction for the male-specific region of the human Y chromosome
2004 StandoutNobel
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence
2014
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Chemical Glycoproteomics
2016 StandoutNobel
Works of Rose Oughtred being referenced
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
2006
The BioGRID interaction database: 2017 update
2016
The BioGRID Interaction Database: 2008 update
2007
The BioGRID Interaction Database: 2011 update
2010
Identification of Amino Acid Residues in a Class I Ubiquitin-conjugating Enzyme Involved in Determining Specificity of Conjugation of Ubiquitin to Proteins
1998
The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists
2007
An extended set of yeast-based functional assays accurately identifies human disease mutations
2016
The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update
2013
The BioGRID interaction database: 2013 update
2012
The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions
2016
Characterization of Rat100, a 300-Kilodalton Ubiquitin-Protein Ligase Induced in Germ Cells of the Rat Testis and Similar to the Drosophila Hyperplastic Discs Gene
2002
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
2020
Ligand Depot: a data warehouse for ligands bound to macromolecules
2004
TargetDB: a target registration database for structural genomics projects
2004
The BioGRID interaction database: 2019 update
2018
Characterization of E3Histone, a Novel Testis Ubiquitin Protein Ligase Which Ubiquitinates Histones
2005