Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network
2019
Infrared molecular fingerprinting of blood-based liquid biopsies for the detection of cancer
2021 StandoutNobel
Transcriptional Regulation by Nrf2
2017 Standout
Hypothesis: RNA and DNA Viral Sequence Integration into the Mammalian Host Genome Supports Long-Term B Cell and T Cell Adaptive Immunity
2017 StandoutNobel
Predicting mRNA Abundance Directly from Genomic Sequence Using Deep Convolutional Neural Networks
2020
A survey of best practices for RNA-seq data analysis
2016 Standout
The Ensembl Variant Effect Predictor
2016 Standout
Wnt/β-catenin signalling: function, biological mechanisms, and therapeutic opportunities
2022 Standout
Pharmacological properties of Salvia officinalis and its components
2017 Standout
Co-incidence of RCC-susceptibility polymorphisms with HIF cis-acting sequences supports a pathway tuning model of cancer
2019 StandoutNobel
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Schizophrenia risk from complex variation of complement component 4
2016 StandoutNature
High Glucose Triggers Nucleotide Imbalance through O-GlcNAcylation of Key Enzymes and Induces KRAS Mutation in Pancreatic Cells
2019
Transition from inflammation to proliferation: a critical step during wound healing
2016 Standout
HIF-independent synthetic lethality between CDK4/6 inhibition and VHL loss across species
2019 StandoutNobel
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
2018
Deep learning for computational biology
2016
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation
2015
The molecular hallmarks of epigenetic control
2016 Standout
Transcriptional architecture of the mammalian circadian clock
2016 Standout
A proteomic atlas of senescence-associated secretomes for aging biomarker development
2020 Standout
DAMPs, ageing, and cancer: The ‘DAMP Hypothesis’
2014
Influence of Metabolism on Epigenetics and Disease
2013 StandoutNobel
Large multiallelic copy number variations in humans
2015
Prediction of cardiovascular risk factors from retinal fundus photographs via deep learning
2018 Standout
Dual-action inhibitors of HIF prolyl hydroxylases that induce binding of a second iron ion
2012 StandoutNobel
Selective targeting of histone methylation
2011
Epigenetic regulation of key vascular genes and growth factors
2011
Oxidative stress as an iceberg in carcinogenesis and cancer biology
2016
Tissue-specific tumorigenesis: context matters
2017
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
Long Noncoding RNAs in Cancer Pathways
2016 Standout
Recurrent somatic mutations in regulatory regions of human cancer genomes
2015
The Human Transcription Factors
2018 Standout
Hepatocellular carcinoma
2021 Standout
Antiviral resistance of stem cells
2018 StandoutNobel
Non-coding driver mutations in human cancer
2021
Cellular senescence in ageing: from mechanisms to therapeutic opportunities
2020 Standout
A comparison of random forest variable selection methods for classification prediction modeling
2019 Standout
The role of enhancers in cancer
2016
Multimodal biomedical AI
2022 Standout
Zika Virus Outbreak on Yap Island, Federated States of Micronesia
2009 Standout
Fine-mapping cellular QTLs with RASQUAL and ATAC-seq
2015
Integrative omics for health and disease
2018
Primary, Adaptive, and Acquired Resistance to Cancer Immunotherapy
2017 Standout
The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth
2023 Standout
Dictionary learning for integrative, multimodal and scalable single-cell analysis
2023 Standout
Oxidative Stress in Cancer
2020 Standout
Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems
2014
Roadmap for regulation
2015 Nature
The depths of virus exaptation
2018
Development of homogeneous luminescence assays for histone demethylase catalysis and binding
2010
Universal Patterns of Selection in Cancer and Somatic Tissues
2017
Transcription factors: from enhancer binding to developmental control
2012 Standout
Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis
2017
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
2019
Loss of RNF43 Function Contributes to Gastric Carcinogenesis by Impairing DNA Damage Response
2020
Applications of machine learning in drug discovery and development
2019 Standout
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
2012
Modeling gene expression using chromatin features in various cellular contexts
2012
Epigenetic modifications and human disease
2010 Standout
Interpreting neural networks for biological sequences by learning stochastic masks
2022 StandoutNobel
Monitoring immune responses in the tumor microenvironment
2016
Nucleotide excision repair is impaired by binding of transcription factors to DNA
2016 Nature
The HUSH complex cooperates with TRIM28 to repress young retrotransposons and new genes
2018
Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
2019
Epigenetic mechanisms in anti‐cancer actions of bioactive food components – the implications in cancer prevention
2012
Machine learning applications in genetics and genomics
2015
Deep Learning for Health Informatics
2016 Standout
Selective Small Molecule Probes for the Hypoxia Inducible Factor (HIF) Prolyl Hydroxylases
2013 StandoutNobel
Deep learning for healthcare: review, opportunities and challenges
2017 Standout
Toward a Literature-Driven Definition of Big Data in Healthcare
2015 Standout
Cell type–specific genomics of Drosophila neurons
2012
Big Data Bioinformatics
2014
A computationally fast variable importance test for random forests for high-dimensional data
2016
Metabolic reprogramming and cancer progression
2020 StandoutScience
Mechanisms of Diabetic Complications
2013 Standout
Comparison of vero cell plaque assay, TaqMan reverse transcriptase polymerase chain reaction RNA assay, and VecTest antigen assay for detection of West Nile virus in field-collected mosquitoes.
2002
Sudestada1, a Drosophila ribosomal prolyl-hydroxylase required for mRNA translation, cell homeostasis, and organ growth
2014 StandoutNobel
An analysis of Indonesian government policies against COVID-19
2021 Standout
Definitions, methods, and applications in interpretable machine learning
2019 Standout
A computationally fast variable importance test for random forests for high-dimensional data
2016
Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation
2012 StandoutNobel
The revival of the Gini importance?
2018 Standout
Histone Demethylase UTX and Chromatin Remodeler BRM Bind Directly to CBP and Modulate Acetylation of Histone H3 Lysine 27
2012
Works of Rosa Karlić being referenced
Histone modification levels are predictive for gene expression
2010
Somatic mutation landscape reveals differential variability of cell-of-origin for primary liver cancer
2020
Analysis of somatic microsatellite indels identifies driver events in human tumors
2017
Genetic Variation in Human DNA Replication Timing
2014
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
2017
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
2015 Nature