Citation Impact
Citing Papers
Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation
2004 StandoutNobel
Comprehensive computational design of ordered peptide macrocycles
2017 StandoutScienceNobel
Voltage sensor conformations in the open and closed states in rosetta structural models of K + channels
2006 StandoutNobel
Emergence of symmetry in homooligomeric biological assemblies
2008 StandoutNobel
Protein Structure Prediction Using Rosetta
2004 StandoutNobel
CAPRI: A Critical Assessment of PRedicted Interactions
2003
A structure‐based benchmark for protein–protein binding affinity
2011
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment
2010
Modeling Symmetric Macromolecular Structures in Rosetta3
2011 StandoutNobel
Computational Design of a Protein-Based Enzyme Inhibitor
2013 StandoutNobel
A De Novo Protein Binding Pair By Computational Design and Directed Evolution
2011 StandoutNobel
DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking
2008
Multi-input chemical control of protein dimerization for programming graded cellular responses
2019 StandoutNobel
Geometry‐based flexible and symmetric protein docking
2005
A New Twist in TCR Diversity Revealed by a Forbidden αβ TCR
2007 StandoutNobel
Protein–protein docking: is the glass half-full or half-empty?
2004
The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein–Protein Complexes with an Application to Protein–Protein Docking
2005
ZDOCK: An initial‐stage protein‐docking algorithm
2003
The ClusPro web server for protein–protein docking
2017 Standout
The REDCap consortium: Building an international community of software platform partners
2019 Standout
Computational Design of High-Affinity Epitope Scaffolds by Backbone Grafting of a Linear Epitope
2011 StandoutNobel
Protein–protein docking benchmark version 4.0
2010
Discrimination of near‐native structures in protein–protein docking by testing the stability of local minima
2008
ZRANK: Reranking protein docking predictions with an optimized energy function
2007
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Optimal Clustering for Detecting Near-Native Conformations in Protein Docking
2005
Protein–protein docking benchmark version 3.0
2008
Accounting for loop flexibility during protein–protein docking
2005
Computational Prediction of Protein–Protein Interactions
2007
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
2011 StandoutNatureNobel
Protein–Protein Interactions: Hot Spots and Structurally Conserved Residues often Locate in Complemented Pockets that Pre-organized in the Unbound States: Implications for Docking
2004
Protein–Protein Docking with Backbone Flexibility
2007 StandoutNobel
A Pareto-Optimal Refinement Method for Protein Design Scaffolds
2013 StandoutNobel
PIPER: An FFT‐based protein docking program with pairwise potentials
2006
Hotspot-Centric De Novo Design of Protein Binders
2011 StandoutNobel
Structure of the Ultra-High-Affinity Colicin E2 DNase–Im2 Complex
2012 StandoutNobel
PatchDock and SymmDock: servers for rigid and symmetric docking
2005 Standout
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
2013 Standout
Protein structure prediction and analysis using the Robetta server
2004 StandoutNobel
An iterative knowledge‐based scoring function for protein–protein recognition
2008
Funnel Hunting in a Rough Terrain: Learning and Discriminating Native Energy Funnels
2008
Classification of protein complexes based on docking difficulty
2005
RosettaLigand Docking with Full Ligand and Receptor Flexibility
2008 StandoutNobel
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Assessing predictions of protein–protein interaction: The CAPRI experiment
2005
Improved side‐chain modeling for protein–protein docking
2005 StandoutNobel
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
2011
GRAMM-X public web server for protein-protein docking
2006
Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs
2010 StandoutNobel
Protein–protein docking benchmark 2.0: An update
2005
Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
2003 StandoutNobel
STRING 8--a global view on proteins and their functional interactions in 630 organisms
2008 Standout
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Identification of near‐native structures by clustering protein docking conformations
2007
Toward high-resolution prediction and design of transmembrane helical protein structures
2007 StandoutNobel
Prediction of the structure of symmetrical protein assemblies
2007 StandoutNobel
The structural and energetic basis for high selectivity in a high-affinity protein-protein interaction
2010 StandoutNobel
Interaction-site prediction for protein complexes: a critical assessment
2007
SMART on FHIR: a standards-based, interoperable apps platform for electronic health records
2016
How good is automated protein docking?
2013
The Impact of Side-Chain Packing on Protein Docking Refinement
2015
Toward High-Resolution de Novo Structure Prediction for Small Proteins
2005 StandoutScienceNobel
Rational HIV Immunogen Design to Target Specific Germline B Cell Receptors
2013 StandoutScienceNobel
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Self-Assembling 2D Arrays with de Novo Protein Building Blocks
2019 StandoutNobel
A model of anthrax toxin lethal factor bound to protective antigen
2005 StandoutNobel
Machine Learning in Medicine
2019 Standout
Accounting for observed small angle X‐ray scattering profile in the protein–protein docking server cluspro
2015
Macromolecular Modeling with Rosetta
2008 StandoutNobel
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
Progress in Modeling of Protein Structures and Interactions
2005 StandoutScienceNobel
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings
2011 StandoutNobel
Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin
2011 StandoutScienceNobel
A benchmark testing ground for integrating homology modeling and protein docking
2016
Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta
2017 StandoutNobel
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
2011 Standout
Computational design of a pH-sensitive IgG binding protein
2013 StandoutNobel
SwarmDock and the Use of Normal Modes in Protein-Protein Docking
2010
RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design
2011 StandoutNobel
Works of Rong Chen being referenced
Ontology-driven indexing of public datasets for translational bioinformatics
2009
A protein–protein docking benchmark
2003
Archetype-Based Knowledge Management for Semantic Interoperability of Electronic Health Records
2009