Rohit Gupte

VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program

Single-cell transcriptome landscape of circulating CD4+ T cell populations in autoimmune diseases

Inference and analysis of cell-cell communication using CellChat

Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Functional interrogation of a SARS-CoV-2 host protein interactome identifies unique and shared coronavirus host factors

SAVER: gene expression recovery for single-cell RNA sequencing

Dictionary learning for integrative, multimodal and scalable single-cell analysis

Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19

Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks

PGE2-EP2/EP4 signaling elicits immunosuppression by driving the mregDC-Treg axis in inflammatory tumor microenvironment

Comprehensive Integration of Single-Cell Data

Inhibition of SARS-CoV-2 Infections in Engineered Human Tissues Using Clinical-Grade Soluble Human ACE2

CellTalkDB: a manually curated database of ligand–receptor interactions in humans and mice

Synthetic Siglec-9 Agonists Inhibit Neutrophil Activation Associated with COVID-19

Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH