Citation Impact
Citing Papers
Simplified and representative bacterial community of maize roots
2017
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
2017 Standout
The biomass distribution on Earth
2018 Standout
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
2015 Standout
Characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course
2017
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
2013 Standout
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
2019 Standout
Co-occurrence patterns in aquatic bacterial communities across changing permafrost landscapes
2016
Microbial co-occurrence patterns in deep Precambrian bedrock fracture fluids
2016
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
2015
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
2014 Standout
cytoHubba: identifying hub objects and sub-networks from complex interactome
2014 Standout
Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil
2016
Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes
2013
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Marine microbial community dynamics and their ecological interpretation
2015
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis
2012
Environmental and health effects of the herbicide glyphosate
2017 Standout
Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis
2011
Modeling microbial communities: Current, developing, and future technologies for predicting microbial community interaction
2012
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
Soil bacterial networks are less stable under drought than fungal networks
2018
The plastic in microplastics: A review
2017 Standout
Microbiome Datasets Are Compositional: And This Is Not Optional
2017 Standout
Network-based metabolic analysis and microbial community modeling
2016
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
2018 Standout
Microbial interactions and community assembly at microscales
2016
Microplastics in freshwater systems: A review of the emerging threats, identification of knowledge gaps and prioritisation of research needs
2015 Standout
Microplastics in freshwater systems: A review on occurrence, environmental effects, and methods for microplastics detection
2017 Standout
Microbial Co-occurrence Relationships in the Human Microbiome
2012 Standout
Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
2017
Plastic Pollution in the World's Oceans: More than 5 Trillion Plastic Pieces Weighing over 250,000 Tons Afloat at Sea
2014 Standout
Differential abundance analysis for microbial marker-gene surveys
2013 Standout
Environmental factors influencing the development and spread of antibiotic resistance
2017 Standout
Correlation Network Analysis Applied to Complex Biofilm Communities
2011
Microbial interactions: from networks to models
2012 Standout
Current understanding of the human microbiome
2018 Standout
Bacteria–phage coevolution as a driver of ecological and evolutionary processes in microbial communities
2014
Predicting Bacterial Community Assemblages Using an Artificial Neural Network Approach
2014
Review of antibiotic resistance in China and its environment
2017 Standout
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
2017
Predicting bacterial community assemblages using an artificial neural network approach
2012
Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes
2016
Keystone taxa as drivers of microbiome structure and functioning
2018 Standout
Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation
2021
Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions
2011
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Soil microbiomes and climate change
2019 Standout
Human health risk assessment of antibiotic resistance associated with antibiotic residues in the environment: A review
2018 Standout
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
The human skin microbiome
2018 Standout
Global biogeography of highly diverse protistan communities in soil
2012
Integrating gut microbiota immaturity and disease‐discriminatory taxa to diagnose the initiation and severity of shrimp disease
2017 Standout
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
2015 Standout
Soil quality – A critical review
2018 Standout
Acquisition of the arginine deiminase system benefits epiparasitic Saccharibacteria and their host bacteria in a mammalian niche environment
2022
Plastic debris in the open ocean
2014 Standout
2015 Standout
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
2016
Taxon interactions control the distributions of cryoconite bacteria colonizing a High Arctic ice cap
2016
Coherent dynamics and association networks among lake bacterioplankton taxa
2011
Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China
2016
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Marine Anthropogenic Litter
2015 Standout
Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade
2012
Plant cultivars imprint the rhizosphere bacterial community composition and association networks
2017
Structure, Variation, and Co-occurrence of Soil Microbial Communities in Abandoned Sites of a Rare Earth Elements Mine
2016
Fundamentals of Microbial Community Resistance and Resilience
2012
Influence of resistance breeding in common bean on rhizosphere microbiome composition and function
2017
Microbial diversity and ecological networks as indicators of environmental quality
2017
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
2013
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
2015 Standout
HMMER web server: 2018 update
2018 Standout
From hairballs to hypotheses–biological insights from microbial networks
2018
Back to the basics: The need for ecophysiological insights to enhance our understanding of microbial behaviour in the rhizosphere
2013
Plastic and Human Health: A Micro Issue?
2017 Standout
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
2015 Standout
BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation
2017
Life in the “Plastisphere”: Microbial Communities on Plastic Marine Debris
2013 Standout
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
2015
Network topology reveals high connectance levels and few key microbial genera within soils
2014
The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome
2015
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
2016
Works of Rohan Sachdeva being referenced
290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
2017
Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data
2014
Marine bacterial, archaeal and protistan association networks reveal ecological linkages
2011
Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight
2010
Beta diversity of marine bacteria depends on temporal scale
2013
Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes
2015
Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters
2017
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight
2013
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
2014
Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria
2021
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience
2013
Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists
2013