Citation Impact
Citing Papers
High-throughput characterization of protein–protein interactions by reprogramming yeast mating
2017 StandoutNobel
FLASH: fast length adjustment of short reads to improve genome assemblies
2011 Standout
Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells
2013 StandoutScience
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Characterizing and measuring bias in sequence data
2013
Root Exudates Regulate Soil Fungal Community Composition and Diversity
2007
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
2013 Standout
A bacterium that degrades and assimilates poly(ethylene terephthalate)
2016 StandoutScience
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
2015 Standout
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
2009 Standout
Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota
2012 StandoutScience
QUAST: quality assessment tool for genome assemblies
2013 Standout
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
AgBase: a functional genomics resource for agriculture
2006
Engineered receptors for soluble cellular communication and disease sensing
2024 StandoutNatureNobel
An integrated map of genetic variation from 1,092 human genomes
2012 StandoutNature
Controlling CRISPR-Cas9 with ligand-activated and ligand-deactivated sgRNAs
2019 StandoutNobel
A core gut microbiome in obese and lean twins
2008 StandoutNature
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
2014 Standout
High-throughput functional annotation and data mining with the Blast2GO suite
2008 Standout
De novo assembly and genotyping of variants using colored de Bruijn graphs
2012
GapFiller: a de novo assembly approach to fill the gap within paired reads
2012
Modular and tunable biological feedback control using a de novo protein switch
2019 StandoutNatureNobel
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
Human Genetics Shape the Gut Microbiome
2014 Standout
GAGE: A critical evaluation of genome assemblies and assembly algorithms
2011
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
Proliferation, cell cycle and apoptosis in cancer
2001 StandoutNature
Discovery of microbial natural products by activation of silent biosynthetic gene clusters
2015
Finished bacterial genomes from shotgun sequence data
2012
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
The MaSuRCA genome assembler
2013
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
2013
Human nutrition, the gut microbiome and the immune system
2011 StandoutNature
Metagenomic biomarker discovery and explanation
2011 Standout
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
2016
Mitochondria: In Sickness and in Health
2012 Standout
The Science of Antibiotic Discovery
2020 Standout
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
2012 Standout
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
Next-Generation Sequence Assembly: Four Stages of Data Processing and Computational Challenges
2013
Diet–microbiota interactions as moderators of human metabolism
2016 StandoutNature
Functional interactions between the gut microbiota and host metabolism
2012 StandoutNature
AgBase: a unified resource for functional analysis in agriculture
2006
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
2014
High-throughput genome scaffolding from in vivo DNA interaction frequency
2013
Experimental and analytical tools for studying the human microbiome
2011
Comprehensive variation discovery in single human genomes
2014
De novo design of bioactive protein switches
2019 StandoutNatureNobel
Near-optimal probabilistic RNA-seq quantification
2016 Standout
Paired-end sequencing of Fosmid libraries by Illumina
2012
Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
2008 Standout
Engineering T Cells with Customized Therapeutic Response Programs Using Synthetic Notch Receptors
2016
NCBI prokaryotic genome annotation pipeline
2016 Standout
Diversity, stability and resilience of the human gut microbiota
2012 StandoutNature
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes
2004
Initial impact of the sequencing of the human genome
2011 Nature
Microbiota-Generated Metabolites Promote Metabolic Benefits via Gut-Brain Neural Circuits
2014 Standout
High-quality genome (re)assembly using chromosomal contact data
2014
Property and performance of red mud-based catalysts for the complete oxidation of volatile organic compounds
2015
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
2008 StandoutNature
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
2013 Standout
A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly
2015
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
2017 StandoutScience
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
2014
Cellular checkpoint control using programmable sequential logic
2018 Science
The Genome 10K Project: A Way Forward
2015
Using comparative genome analysis to identify problems in annotated microbial genomes
2010
Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41
2008 Standout
REAPR: a universal tool for genome assembly evaluation
2013
The Max Network Gone Mad
2001
Molecular Diagnosis of Infantile Mitochondrial Disease with Targeted Next-Generation Sequencing
2012
Host-Gut Microbiota Metabolic Interactions
2012 StandoutScience
The Long-Term Stability of the Human Gut Microbiota
2013 StandoutScience
Microbiota regulates immune defense against respiratory tract influenza A virus infection
2011 Standout
Recent Advances in the Catalytic Oxidation of Volatile Organic Compounds: A Review Based on Pollutant Sorts and Sources
2019 Standout
De novo design of protein logic gates
2020 StandoutScienceNobel
Works of Robert Nicol being referenced
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
2010
Functional optimization of gene clusters by combinatorial design and assembly
2014
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration
2016
The Complete Genome and Proteome of Mycoplasma mobile
2004
Ginsenosides stimulate the growth of soilborne pathogens of American ginseng
2003
Association of specific DNA binding and transcriptional repression with the transforming and myogenic activities of c-Ski.
1999
Synergistic co-processing of Red Mud waste from the Bayer process and a crude untreated waste stream from bio-diesel production
2012