Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation
2014 StandoutScienceNobel
The biomass distribution on Earth
2018 Standout
HH-suite3 for fast remote homology detection and deep protein annotation
2019
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach
2021 StandoutNobel
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
2016
ColabFold: making protein folding accessible to all
2022 Standout
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
2014 Standout
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
2018
A pupal transcriptomic screen identifies Ral as a target of store-operated calcium entry in Drosophila neurons
2017 StandoutNobel
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis
2016 StandoutNobel
Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3
2015 StandoutNobel
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
Accurate detection of complex structural variations using single-molecule sequencing
2018
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity
2014 StandoutNobel
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum
2015 Nature
Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome
2003
RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes
2017 StandoutNobel
A mitochondrial genome sequence of a hominin from Sima de los Huesos
2013 StandoutNatureNobel
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
2015 Standout
Foreign DNA capture during CRISPR–Cas adaptive immunity
2015 StandoutNatureNobel
A Functional Mini-Integrase in a Two-Protein Type V-C CRISPR System
2019 StandoutNobel
Deciphering key features in protein structures with the new ENDscript server
2014 Standout
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
MAFFT: Iterative Refinement and Additional Methods
2013
Initial sequence of the chimpanzee genome and comparison with the human genome
2005 StandoutNature
Introducing difference recurrence relations for faster semi-global alignment of long sequences
2018
Adding unaligned sequences into an existing alignment using MAFFT and LAST
2012
Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer
2017 StandoutNobel
Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins
2016 StandoutNatureNobel
Sensitive protein alignments at tree-of-life scale using DIAMOND
2021 Standout
Compression of FASTQ and SAM Format Sequencing Data
2013
Assembly of long, error-prone reads using repeat graphs
2019 Standout
Genome assembly using Nanopore-guided long and error-free DNA reads
2015
Hepatitis B virus-human chimeric transcript HBx-LINE1 promotes hepatic injury via sequestering cellular microRNA-122
2015
Regulatory T Cell-Specific Epigenomic Region Variants Are a Key Determinant of Susceptibility to Common Autoimmune Diseases
2020 StandoutNobel
CasX enzymes comprise a distinct family of RNA-guided genome editors
2019 StandoutNatureNobel
Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
2017
Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy
2016
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
2017 Standout
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
2016 StandoutNatureNobel
IMG/M: integrated genome and metagenome comparative data analysis system
2016
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
2020
LAMSA: fast split read alignment with long approximate matches
2016
The EMBL-EBI search and sequence analysis tools APIs in 2019
2019 Standout
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
2016
Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
2012
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
2018 StandoutScienceNobel
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
2012
Kart: a divide-and-conquer algorithm for NGS read alignment
2017
High-throughput DNA sequence data compression
2013
The Sequence Read Archive: a decade more of explosive growth
2021 Standout
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
2013 Standout
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
2015 StandoutNobel
PBSIM: PacBio reads simulator—toward accurate genome assembly
2012
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
2013 StandoutNobel
PhyloSift: phylogenetic analysis of genomes and metagenomes
2014
Structural Dynamics of Eukaryotic Chromosome Evolution
2003 StandoutScience
The makers of the Protoaurignacian and implications for Neandertal extinction
2015 StandoutScienceNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
rHAT: fast alignment of noisy long reads with regional hashing
2015
Works of Raymond Wan being referenced
Incorporating sequence quality data into alignment improves DNA read mapping
2010
Adaptive seeds tame genomic sequence comparison
2011
Transformations for the compression of FASTQ quality scores of next-generation sequencing data
2011
ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution
2013