Citation Impact
Citing Papers
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
2012 StandoutScienceNobel
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Comprehensive computational design of ordered peptide macrocycles
2017 StandoutScienceNobel
SNARE Proteins: One to Fuse and Three to Keep the Nascent Fusion Pore Open
2012 StandoutScienceNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Physically realistic homology models built with rosetta can be more accurate than their templates
2006 StandoutNobel
Hallucinating symmetric protein assemblies
2022 StandoutScienceNobel
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
CAPRI: A Critical Assessment of PRedicted Interactions
2003
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
2008 Standout
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
2013
From conjugation to T4S systems in Gram‐negative bacteria: a mechanistic biology perspective
2019
Modeling structurally variable regions in homologous proteins with rosetta
2004 StandoutNobel
In silico Protein Recombination: Enhancing Template and Sequence Alignment Selection for Comparative Protein Modelling
2003
Comprehensive Evaluation of Protein Structure Alignment Methods: Scoring by Geometric Measures
2005 StandoutNobel
The targets of CAPRI rounds 3–5
2005
A kinematic view of loop closure
2004
An Integrated Framework Advancing Membrane Protein Modeling and Design
2015
Geometry‐based flexible and symmetric protein docking
2005
LGA: a method for finding 3D similarities in protein structures
2003
Protein–protein docking: is the glass half-full or half-empty?
2004
SWISS-MODEL: an automated protein homology-modeling server
2003 Standout
The targets of CAPRI rounds 6–12
2007
The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein–Protein Complexes with an Application to Protein–Protein Docking
2005
Protein–protein interaction and quaternary structure
2008
All are not equal: A benchmark of different homology modeling programs
2005
Accurate design of co-assembling multi-component protein nanomaterials
2014 StandoutNatureNobel
Making optimal use of empirical energy functions: Force‐field parameterization in crystal space
2004
CRISPR-Cas: an adaptive immunity system in prokaryotes
2009
Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations
2012
PHASTER: a better, faster version of the PHAST phage search tool
2016 Standout
High-Resolution Comparative Modeling with RosettaCM
2013 StandoutNobel
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
2011 StandoutNatureNobel
MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004 Standout
PHAST: A Fast Phage Search Tool
2011 Standout
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
Evolving New Protein-Protein Interaction Specificity through Promiscuous Intermediates
2015
In search for more accurate alignments in the twilight zone
2002
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
FRankenstein becomes a cyborg: The automatic recombination and realignment of fold recognition models in CASP6
2005
Accounting for loop flexibility during protein–protein docking
2005
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
2011 StandoutNatureNobel
Super-resolution biomolecular crystallography with low-resolution data
2010 StandoutNatureNobel
Protein–Protein Docking with Backbone Flexibility
2007 StandoutNobel
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
2012 Standout
Islander: a database of precisely mapped genomic islands in tRNA and tmRNA genes
2014
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
De novo design of a fluorescence-activating β-barrel
2018 StandoutNatureNobel
High-Resolution Microtubule Structures Reveal the Structural Transitions in αβ-Tubulin upon GTP Hydrolysis
2014 StandoutNobel
Assessment of homology-based predictions in CASP5
2003
Refinement of homology‐based protein structures by molecular dynamics simulation techniques
2003
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Progress in protein–protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side‐chain flexibility
2005 StandoutNobel
TM-align: a protein structure alignment algorithm based on the TM-score
2005 Standout
CASP5 assessment of fold recognition target predictions
2003
The protein folding problem: when will it be solved?
2007
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Assessing predictions of protein–protein interaction: The CAPRI experiment
2005
RosettaDock in CAPRI rounds 6–12
2007 StandoutNobel
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
ISfinder: the reference centre for bacterial insertion sequences
2005 Standout
Programmable design of orthogonal protein heterodimers
2018 StandoutNatureNobel
Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
2003 StandoutNobel
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Structure-based Prediction of bZIP Partnering Specificity
2005
Flexible protein–protein docking
2006
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
2016 StandoutNatureNobel
The HDOCK server for integrated protein–protein docking
2020
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
Near-native structure refinement using in vacuo energy minimization
2007 StandoutNobel
Critical assessment of methods of protein structure prediction (CASP)-round V
2003
Structure of the STRA6 receptor for retinol uptake
2016 StandoutScienceNobel
Toward High-Resolution de Novo Structure Prediction for Small Proteins
2005 StandoutScienceNobel
VirSorter: mining viral signal from microbial genomic data
2015
Rational HIV Immunogen Design to Target Specific Germline B Cell Receptors
2013 StandoutScienceNobel
Systematic discovery of natural CRISPR-Cas12a inhibitors
2018 StandoutScienceNobel
CRISPR-CasΦ from huge phages is a hypercompact genome editor
2020 StandoutScienceNobel
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
2018 StandoutScienceNobel
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
2012
Progress in Modeling of Protein Structures and Interactions
2005 StandoutScienceNobel
Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin
2011 StandoutScienceNobel
Function and Regulation of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) / CRISPR Associated (Cas) Systems
2012
Evolutionary Dynamics of the Prokaryotic Adaptive Immunity System CRISPR-Cas in an Explicit Ecological Context
2013
Top-down design of protein architectures with reinforcement learning
2023 StandoutScienceNobel
Reconfigurable asymmetric protein assemblies through implicit negative design
2022 StandoutScienceNobel
Intermolecular Contact Potentials for Protein–Protein Interactions Extracted from Binding Free Energy Changes upon Mutation
2013
Works of Raphaël Leplae being referenced
Analysis and assessment of comparative modeling predictions in CASP4
2001
Diversity of bacterial type II toxin–antitoxin systems: a comprehensive search and functional analysis of novel families
2011
ACLAME: A CLAssification of Mobile genetic Elements, update 2010
2009
Mobile genetic elements: the agents of open source evolution
2005
Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes
2012
Assessment of CAPRI predictions in rounds 3–5 shows progress in docking procedures
2005
Assessment of blind predictions of protein–protein interactions: Current status of docking methods
2003
ACLAME: A CLAssification of Mobile genetic Elements
2003
MaxBench: evaluation of sequence and structure comparison methods
2002
Prophinder: a computational tool for prophage prediction in prokaryotic genomes
2008