Citation Impact
Citing Papers
Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock
2023 StandoutNobel
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
Protein interface conservation across structure space
2010
CATH functional families predict functional sites in proteins
2020
Computational Complexity: A Modern Approach
2009
2009
Protein oligomer modeling guided by predicted interchain contacts in CASP14
2021 StandoutNobel
Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action
2019 StandoutNobel
Expansive discovery of chemically diverse structured macrocyclic oligoamides
2024 StandoutScienceNobel
Scoring functions for protein–protein interactions
2013 StandoutNobel
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
Computational characterization of B-cell epitopes
2007
Protein–protein docking dealing with the unknown
2009
A De Novo Protein Binding Pair By Computational Design and Directed Evolution
2011 StandoutNobel
Mutations in the MutSα interaction interface of MLH1 can abolish DNA mismatch repair
2006
Random numbers certified by Bell’s theorem
2010 StandoutNature
The leucine-rich repeat structure
2008
Inference of Macromolecular Assemblies from Crystalline State
2007 Standout
Protein–Protein Interaction Hotspots Carved into Sequences
2007
Computational prediction of protein interfaces: A review of data driven methods
2015
The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein–Protein Complexes with an Application to Protein–Protein Docking
2005
Biomacromolecular quantitative structure–activity relationship (BioQSAR): a proof-of-concept study on the modeling, prediction and interpretation of protein–protein binding affinity
2013
Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health
2016
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
The ClusPro web server for protein–protein docking
2017 Standout
The Structural Basis of Antibody-Antigen Recognition
2013
Site-directed Mutations of T4 Helicase Loading Protein (gp59) Reveal Multiple Modes of DNA Polymerase Inhibition and the Mechanism of Unlocking by gp41 Helicase
2006
Docking of Antizyme to Ornithine Decarboxylase and Antizyme Inhibitor using Experimental Mutant and Double-Mutant Cycle Data
2009
Automated Search for new Quantum Experiments
2016 StandoutNobel
Computational design of self-assembling cyclic protein homo-oligomers
2016 StandoutNobel
On the nature of cavities on protein surfaces: Application to the identification of drug‐binding sites
2006
The coming of age of de novo protein design
2016 StandoutNatureNobel
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
2015 Standout
Structural characterization of the carbohydrate-binding module of NanA sialidase, a pneumococcal virulence factor
2015
Protein–Protein Docking with Backbone Flexibility
2007 StandoutNobel
A series of PDB-related databanks for everyday needs
2014
Hotspot-Centric De Novo Design of Protein Binders
2011 StandoutNobel
Structure of the Ultra-High-Affinity Colicin E2 DNase–Im2 Complex
2012 StandoutNobel
Protein binding specificity versus promiscuity
2010
Funnel Hunting in a Rough Terrain: Learning and Discriminating Native Energy Funnels
2008
MutLα and Proliferating Cell Nuclear Antigen Share Binding Sites on MutSβ
2010 StandoutNobel
PRISM: protein interactions by structural matching
2005
A series of PDB related databases for everyday needs
2010
The Top 10 fungal pathogens in molecular plant pathology
2012 Standout
Applications of machine learning in drug discovery and development
2019 Standout
Atg8, a Ubiquitin-like Protein Required for Autophagosome Formation, Mediates Membrane Tethering and Hemifusion
2007 StandoutNobel
Discovering faster matrix multiplication algorithms with reinforcement learning
2022 StandoutNatureNobel
Structural, Evolutionary, and Assembly Principles of Protein Oligomerization
2013
CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK
2011
HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets
2007
Fully Device-Independent Quantum Key Distribution
2014
Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases
2008 StandoutNobel
Cosmic Bell Test Using Random Measurement Settings from High-Redshift Quasars
2018 StandoutNobel
SCOPPI: a structural classification of protein-protein interfaces
2005
The molecular architecture of protein–protein binding sites
2007
In silico identification of functional regions in proteins
2005
Simple yet functional phosphate-loop proteins
2018 StandoutNobel
On the Universe of Protein Folds
2013 StandoutNobel
The structural and energetic basis for high selectivity in a high-affinity protein-protein interaction
2010 StandoutNobel
Clique is hard to approximate within n1−ε
1999
Trevisan's Extractor in the Presence of Quantum Side Information
2012
Interaction-site prediction for protein complexes: a critical assessment
2007
Integrative computational modeling of protein interactions
2014
Identification, Molecular Cloning, and Analysis of Full-Length Hepatitis C Virus Transmitted/Founder Genotypes 1, 3, and 4
2015 StandoutNobel
Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation
2009
A threshold of ln n for approximating set cover
1998 Standout
Computation-Guided Backbone Grafting of a Discontinuous Motif onto a Protein Scaffold
2011 StandoutScienceNobel
The security of practical quantum key distribution
2009 Standout
The emerging field of signal processing on graphs: Extending high-dimensional data analysis to networks and other irregular domains
2013 Standout
Protein−Protein Interfaces: Properties, Preferences, and Projections
2007
Expander graphs and their applications
2006
Nonlocality and communication complexity
2010
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
ATG Systems from the Protein Structural Point of View
2009 StandoutNobel
Molecular Docking and Structure-Based Drug Design Strategies
2015 Standout
Protein NMR Structures Refined with Rosetta Have Higher Accuracy Relative to Corresponding X-ray Crystal Structures
2014 StandoutNobel
meta-PPISP: a meta web server for protein-protein interaction site prediction
2007
Bell nonlocality
2014 Standout
The structural basis of lipopolysaccharide recognition by the TLR4–MD-2 complex
2009 StandoutNature
Topology and data
2009 Standout
Quantum discord as resource for remote state preparation
2012 StandoutNobel
Computational Evolution of Threonine-Rich β-Hairpin Peptides Mimicking Specificity and Affinity of Antibodies
2019 StandoutNobel
Delayed-choice gedanken experiments and their realizations
2016 StandoutNobel
Predicting Functional Effect of Human Missense Mutations Using PolyPhen‐2
2013 Standout
Evolution of a Cell Culture-Derived Genotype 1a Hepatitis C Virus (H77S.2) during Persistent Infection with Chronic Hepatitis in a Chimpanzee
2014
The Inflammasomes: Guardians of the Body
2009 Standout
Massively parallel probabilistic computing with sparse Ising machines
2022 StandoutNobel
Geometry and Complexity Theory
2017
Predicting Protein–Protein Interactions from the Molecular to the Proteome Level
2016
Entanglement detection
2009 Standout
Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein–protein interactions
2007
Crystal Structures of Flax Rust Avirulence Proteins AvrL567-A and -D Reveal Details of the Structural Basis for Flax Disease Resistance Specificity
2007
Scoring optimisation of unbound protein–protein docking including protein binding site predictions
2011
Most Tensor Problems Are NP-Hard
2013 Standout
Two newly identified sites in the ubiquitin‐like protein Atg8 are essential for autophagy
2006 StandoutNobel
Sampling of Min-Entropy Relative to Quantum Knowledge
2011
Works of Ran Raz being referenced
2010
Super-logarithmic depth lower bounds via the direct sum in communication complexity
1995
A Parallel Repetition Theorem
1998
Exponential Separation for One-Way Quantum Communication Complexity, with Applications to Cryptography
2008
The BNS-Chung criterion for multi-party communication complexity
2000
On the distribution of the number of roots of polynomials and explicit weak designs
2003
On the ?log rank?-conjecture in communication complexity
1995
ProMate: A Structure Based Prediction Program to Identify the Location of Protein–Protein Binding Sites
2004
Lower Bounds for Matrix Product in Bounded Depth Circuits with Arbitrary Gates
2001