Standout Papers
Citation Impact
Citing Papers
ShinyGO: a graphical gene-set enrichment tool for animals and plants
2019 Standout
DNA capture by a CRISPR-Cas9–guided adenine base editor
2020 StandoutScienceNobel
Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality
2020 StandoutNobel
deepNF: deep network fusion for protein function prediction
2018
De novo design of picomolar SARS-CoV-2 miniprotein inhibitors
2020 StandoutScienceNobel
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
2019 Standout
A molecular classification of human mesenchymal stromal cells
2016
The Gene Ontology of eukaryotic cilia and flagella
2017
The cell line ontology-based representation, integration and analysis of cell lines used in China
2019
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Inference and analysis of cell-cell communication using CellChat
2021 Standout
AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network
2020
De novo design of immunoglobulin-like domains
2022 StandoutNobel
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Expanding the horizons of microRNA bioinformatics
2018
The Gene Ontology Resource: 20 years and still GOing strong
2018 Standout
Heatmapper: web-enabled heat mapping for all
2016 Standout
Control of repeat-protein curvature by computational protein design
2015 StandoutNobel
Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt
2014
mixOmics: An R package for ‘omics feature selection and multiple data integration
2017 Standout
Guidelines for the functional annotation of microRNAs using the Gene Ontology
2016
Frequent hitters: nuisance artifacts in high-throughput screening
2020
A Multibasic Cleavage Site in the Spike Protein of SARS-CoV-2 Is Essential for Infection of Human Lung Cells
2020 Standout
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort
2013
Exploiting and engineering hemoproteins for abiological carbene and nitrene transfer reactions
2017 StandoutNobel
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data
2016
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
Database resources of the National Center for Biotechnology Information: update
2003 Standout
D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
2020
On the Integration of In Silico Drug Design Methods for Drug Repurposing
2017
A Multi-Targeting, Nucleoside-Modified mRNA Influenza Virus Vaccine Provides Broad Protection in Mice
2020 StandoutNobel
The EBI search engine: EBI search as a service—making biological data accessible for all
2017
PomBase 2015: updates to the fission yeast database
2014
Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes
2016
Multimodal biomedical AI
2022 Standout
Drug repurposing: progress, challenges and recommendations
2018 Standout
Revealing the human mucinome
2022 StandoutNobel
EcoGene 3.0
2012
How machine learning can help select capping layers to suppress perovskite degradation
2020 StandoutNobel
ADMETlab: a platform for systematic ADMET evaluation based on a comprehensively collected ADMET database
2018
Reverse Screening Methods to Search for the Protein Targets of Chemopreventive Compounds
2018
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses: Table 1.
2015
Ultra-large library docking for discovering new chemotypes
2019 Nature
The neural basis of psychedelic action
2022 Standout
Applications of machine learning in drug discovery and development
2019 Standout
Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH
2022 StandoutNobel
Rethinking drug design in the artificial intelligence era
2019
A systems approach to infectious disease
2020
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks
2016
The Cellosaurus, a Cell-Line Knowledge Resource
2018
Artificial intelligence and business models in the sustainable development goals perspective: A systematic literature review
2020 Standout
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins
2018
Search and sequence analysis tools services from EMBL-EBI in 2022
2022 Standout
The Pfam protein families database in 2019
2018 Standout
Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression
2015 StandoutNobel
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings
2021 Standout
The EMBL-EBI search and sequence analysis tools APIs in 2019
2019 Standout
Natural Products as Sources of New Drugs over the Nearly Four Decades from 01/1981 to 09/2019
2020 Standout
Leucine-Rich Repeat (LRR) Domains Containing Intervening Motifs in Plants
2012
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
2014
Toward a Global Understanding of Chemical Pollution: A First Comprehensive Analysis of National and Regional Chemical Inventories
2020 Standout
The IUPHAR/BPS Guide to PHARMACOLOGY in 2020: extending immunopharmacology content and introducing the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY
2019
admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties
2018
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
2014 StandoutNobel
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
Molecular Docking: Shifting Paradigms in Drug Discovery
2019 Standout
PubChem 2023 update
2022 Standout
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
2018 Standout
PubChem 2019 update: improved access to chemical data
2018 Standout
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
2017 Standout
Inverse Design of Solid-State Materials via a Continuous Representation
2019
The neXtProt knowledgebase in 2020: data, tools and usability improvements
2019
HMMER web server: 2018 update
2018 Standout
Current developments in Coot for macromolecular model building of Electron Cryo‐microscopy and Crystallographic Data
2019
ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties
2021 Standout
Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology
2018
Dealing with frequent hitters in drug discovery: a multidisciplinary view on the issue of filtering compounds on biological screenings
2019
PubChem in 2021: new data content and improved web interfaces
2020 Standout
Structural Analysis and Identification of Colloidal Aggregators in Drug Discovery
2019
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
miRBase: from microRNA sequences to function
2018 Standout
CATH: increased structural coverage of functional space
2020
Natural Products for Drug Discovery in the 21st Century: Innovations for Novel Drug Discovery
2018
DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)
2022 Standout
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Comparing Molecular Patterns Using the Example of SMARTS: Theory and Algorithms
2019
Works of Prudence Mutowo being referenced
The GOA database: Gene Ontology annotation updates for 2015
2014
A method for increasing expressivity of Gene Ontology annotations using a compositional approach
2014
The ChEMBL database in 2017
2016 Standout
Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation
2012
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans
2013