Citation Impact
Citing Papers
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Exploring protein–ligand recognition with Binding MOAD
2005
The group II intron ribonucleoprotein precursor is a large, loosely packed structure
2010 StandoutNobel
Reaching for high-hanging fruit in drug discovery at protein–protein interfaces
2007 StandoutNature
Control of repeat-protein curvature by computational protein design
2015 StandoutNobel
A De Novo Protein Binding Pair By Computational Design and Directed Evolution
2011 StandoutNobel
EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics
2014 StandoutNobel
Protein structure prediction on the Web: a case study using the Phyre server
2009 Standout
Electron crystallographic analysis of two-dimensional crystals of sensory rhodopsin II: A 6.9 å projection structure1 1Edited by A. Klug
2001 StandoutNobel
RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
2011 StandoutNobel
An Atomic Environment Potential for use in Protein Structure Prediction
2005 StandoutNobel
Analysis of Anisotropic Side-chain Packing in Proteins and Application to High-resolution Structure Prediction
2004 StandoutNobel
The Protein Data Bank
2000 Standout
Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design
1998
Evolution of the archaeal rhodopsins: evolution rate changes by gene duplication and functional differentiation
1999
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
2013 StandoutNatureNobel
Statistical significance of hierarchical multi‐body potentials based on Delaunay tessellation and their application in sequence‐structure alignment
1997
Calculation of Standard Atomic Volumes for RNA and Comparison with Proteins: RNA is Packed More Tightly
2004
Investigation of the molecular surface area and volume: Defined and calculated by the molecular face theory
2010
A Procedure for Detection and Quantitation of Cavity Volumes in Proteins
2002
PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nε-dimethyl lysine demethylase
2009 StandoutNobel
Estimation of Amino Acid Residue Substitution Rates at Local Spatial Regions and Application in Protein Function Inference: A Bayesian Monte Carlo Approach
2005
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
2014 Standout
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Elucidation and Chemical Modulation of Sulfolipid-1 Biosynthesis in Mycobacterium tuberculosis
2011 StandoutNobel
Structural Determinants of the Rate of Protein Evolution in Yeast
2006 StandoutNobel
The trRosetta server for fast and accurate protein structure prediction
2021 StandoutNobel
Geometric measures of large biomolecules: Surface, volume, and pockets
2011
Ligand docking and binding site analysis with PyMOL and Autodock/Vina
2010 Standout
Two RNA-binding motifs in eIF3 direct HCV IRES-dependent translation
2013 StandoutNobel
The Geometry of the Ribosomal Polypeptide Exit Tunnel
2006 StandoutNobel
On quantification of geometry and topology of protein pockets and channels for assessing mutation effects
2018
Role of backbone strain in de novo design of complex α/β protein structures
2021 StandoutNobel
PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure
2009
Crystal Structure of the E2 Transactivation Domain of Human Papillomavirus Type 11 Bound to a Protein Interaction Inhibitor
2004
Protein–Protein Interactions: Hot Spots and Structurally Conserved Residues often Locate in Complemented Pockets that Pre-organized in the Unbound States: Implications for Docking
2004
Water in protein cavities: A procedure to identify internal water and exchange pathways and application to fatty acid‐binding protein
2002
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
2004 Standout
Quantification of protein surfaces, volumes and atom–atomcontacts using a constrained Voronoi procedure
2002
Intrinsic disorder drives N-terminal ubiquitination by Ube2w
2014 StandoutNobel
Knowledge-Based Potential for Positioning Membrane-Associated Structures and Assessing Residue-Specific Energetic Contributions
2012
Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
2012 Standout
Substrate-specific structural rearrangements of human Dicer
2013 StandoutNobel
De Novo Enzyme Design Using Rosetta3
2011 StandoutNobel
Rapid grid‐based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects
2001
Structure prediction for CASP8 with all‐atom refinement using Rosetta
2009 StandoutNobel
I-TASSER: a unified platform for automated protein structure and function prediction
2010 Standout
The Phyre2 web portal for protein modeling, prediction and analysis
2015 Standout
X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
2002 StandoutNatureNobel
Are Proteins Well-Packed?
2001
Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins
2001
Voronoi and Voronoi-related tessellations in studies of protein structure and interaction
2004
RosettaHoles: Rapid assessment of protein core packing for structure prediction, refinement, design, and validation
2008 StandoutNobel
A General Computational Approach for Repeat Protein Design
2014 StandoutNobel
Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement
2013 StandoutNobel
Voronoia: analyzing packing in protein structures
2008
Identification of tunnels in proteins, nucleic acids, inorganic materials and molecular ensembles
2006
A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations
2018 StandoutNobel
Nonpolar solutes enhance water structure within hydration shells while reducing interactions between them
2005 StandoutNobel
Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains
2013 StandoutNobel
Steric and Dynamic Parameters Influencing In Situ Cycloadditions to Form Triazole Inhibitors with Crystalline Acetylcholinesterase
2016 StandoutNobel
Integrity of the P-site is probed during maturation of the 60S ribosomal subunit
2012 StandoutNobel
CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference
2014 StandoutNobel
Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase
2013 StandoutNobel
Progress in Ab Initio QM/MM Free-Energy Simulations of Electrostatic Energies in Proteins: Accelerated QM/MM Studies of pKa, Redox Reactions and Solvation Free Energies
2008 StandoutNobel
Design and Characterization of Stabilized Derivatives of Human CD4D12 and CD4D1
2011 StandoutNobel
Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein
2019 StandoutNobel
Control over overall shape and size in de novo designed proteins
2015 StandoutNobel
The role of the allosteric B site in the fumarase reaction
2004 StandoutNobel
The rv1184c Locus Encodes Chp2, an Acyltransferase in Mycobacterium tuberculosis Polyacyltrehalose Lipid Biosynthesis
2014 StandoutNobel
Recognition of 1,3‐Butadiene by a Porous Coordination Polymer
2016 StandoutNobel
CASTp 3.0: computed atlas of surface topography of proteins
2018 Standout
Works of Ping Fu being referenced
Analytical shape computation of macromolecules: I. molecular area and volume through alpha shape
1998
Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins
1998
Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins
1998