Citation Impact
Citing Papers
Why highly expressed proteins evolve slowly
2005 StandoutNobel
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
2007 StandoutScience
The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
2004
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
2007 StandoutScience
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
2009 Standout
Chromosome Evolution in the Thermotogales : Large-Scale Inversions and Strain Diversification of CRISPR Sequences
2006
UCHIME improves sensitivity and speed of chimera detection
2011 Standout
A rooted phylogeny resolves early bacterial evolution
2021 Science
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Taxon sampling and the accuracy of phylogenetic analyses
2008
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Hypoxia and intra-complex genetic suppressors rescue complex I mutants by a shared mechanism
2024 StandoutNobel
Phylogenomics Revives Traditional Views on Deep Animal Relationships
2009 Standout
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics
2007
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
2014 Standout
Large-scale sequencing and the new animal phylogeny
2006
Homeodomain Subtypes and Functional Diversity
2011
The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics
2010
Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)
2011
An index of substitution saturation and its application
2002
Monophyly of Primary Photosynthetic Eukaryotes: Green Plants, Red Algae, and Glaucophytes
2005
Comprehensive Multigene Phylogenies of Excavate Protists Reveal the Evolutionary Positions of “Primitive” Eukaryotes
2005
Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history
2021
Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans
2007
Lateral gene transfer in eukaryotes
2005
The Diversity Of Eukaryotes And The Root Of The Eukaryotic Tree
2008
Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)
2003
Ultrafast Approximation for Phylogenetic Bootstrap
2013 Standout
A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup
2003
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
2001 StandoutNature
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
2010 Standout
Phylogenomics and the reconstruction of the tree of life
2005
Identification of small RNA pathway genes using patterns of phylogenetic conservation and divergence
2012 StandoutNatureNobel
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
2014 Standout
MicroRNAs in Amoebozoa: Deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs
2012
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
2016 Standout
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
2010 StandoutNature
Lateral transfer of the gene for a widely used marker, α-tubulin, indicated by a multi-protein study of the phylogenetic position of Andalucia (Excavata)
2007
The tree of eukaryotes
2005
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects
2006
Evolutionarily Conserved Roles of the Dicer Helicase Domain in Regulating RNA Interference Processing
2014 StandoutNobel
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
2011
A Catalogue of Eukaryotic Transcription Factor Types, Their Evolutionary Origin, and Species Distribution
2011
The Human Transcription Factors
2018 Standout
ImOSM: Intermittent Evolution and Robustness of Phylogenetic Methods
2011
Monophyly of Rhizaria and Multigene Phylogeny of Unicellular Bikonts
2006
Theoretical Foundation of the Balanced Minimum Evolution Method of Phylogenetic Inference and Its Relationship to Weighted Least-Squares Tree Fitting
2003
Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages
2007
Origin of the polycomb repressive complex 2 and gene silencing by an E(z) homolog in the unicellular alga Chlamydomonas
2010
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
2004
The excavate protozoan phyla Metamonada Grasse emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa
2003
Ganglion-specific splicing of TRPV1 underlies infrared sensation in vampire bats
2011 StandoutNatureNobel
Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
2005 Standout
Metazoan MicroRNAs
2018 Standout
Phylogenomic Analysis Supports the Monophyly of Cryptophytes and Haptophytes and the Association of Rhizaria with Chromalveolates
2007
Analyses of RNA Polymerase II Genes from Free-Living Protists: Phylogeny, Long Branch Attraction, and the Eukaryotic Big Bang
2002
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
Myosin domain evolution and the primary divergence of eukaryotes
2005 Nature
Gene Transfers from Nanoarchaeota to an Ancestor of Diplomonads and Parabasalids
2004
Initial sequence of the chimpanzee genome and comparison with the human genome
2005 StandoutNature
Relaxed Phylogenetics and Dating with Confidence
2006 Standout
Tunicates and not cephalochordates are the closest living relatives of vertebrates
2006 StandoutNature
The prevalence of terraced treescapes in analyses of phylogenetic data sets
2018
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
Root of the Eukaryota Tree as Inferred from Combined Maximum Likelihood Analyses of Multiple Molecular Sequence Data
2004
Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki
2010
Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny
2008
Molecular Systematics of Aphids and Their Primary Endosymbionts
2001
More Taxa, More Characters: The Hoatzin Problem Is Still Unresolved
2003
Prospects for Building Large Timetrees Using Molecular Data with Incomplete Gene Coverage among Species
2014
Treasure hunt in an amoeba: non-coding RNAs in Dictyostelium discoideum
2006
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway
2007 StandoutNobel
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods
2009
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
2008 StandoutNature
Genome-scale approaches to resolving incongruence in molecular phylogenies
2003 Nature
Genesis and Expansion of Metazoan Transcription Factor Gene Classes
2008
Broad phylogenomic sampling improves resolution of the animal tree of life
2008 StandoutNature
On the origin and functions of RNA-mediated silencing: from protists to man
2006
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
2004 Nature
Positional information and patterning revisited
2010
Prophages and bacterial genomics: what have we learned so far?
2003
Inference of the Phylogenetic Position of Oxymonads Based on Nine Genes: Support for Metamonada and Excavata
2005
Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics
2007
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
2007
Long Noncoding RNAs: Cellular Address Codes in Development and Disease
2013 Standout
Antibacterial drug discovery in the resistance era
2016 StandoutNature
PhyloGene server for identification and visualization of co-evolving proteins using normalized phylogenetic profiles
2015 StandoutNobel
The Polycomb complex PRC2 and its mark in life
2011 StandoutNature
Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences
2001
Phylogenomics Reshuffles the Eukaryotic Supergroups
2007
Markov-Modulated Markov Chains and the Covarion Process of Molecular Evolution
2004
An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
2005
Reducing the Impact of PCR-Mediated Recombination in Molecular Evolution and Environmental Studies Using a New-Generation High-Fidelity DNA Polymerase
2009
Duplication and Divergence: The Evolution of New Genes and Old Ideas
2004
Rooting the Eukaryote Tree by Using a Derived Gene Fusion
2002 Science
Phylogenomics
2005
Evolution of Proteins and Proteomes: A Phylogenetics Approach
2005
The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
2011 StandoutScience
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2016 StandoutNature
Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales
2015
Gene Regulatory Networks and the Evolution of Animal Body Plans
2006 StandoutScience
Polyubiquitin Insertions and the Phylogeny of Cercozoa and Rhizaria
2005
Actin, a Central Player in Cell Shape and Movement
2009 StandoutScience
Widespread but Poorly Understood Bacteria: Candidate Phyla Radiation
2022
The Deep Roots of Eukaryotes
2003 Science
Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes
2003 Science
Mapping the Origins and Expansion of the Indo-European Language Family
2012 StandoutScience
Biologically active Phytophthora mating hormone prepared by catalytic asymmetric total synthesis
2008 StandoutNobel
Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes
2012
Evaluating Support for the Current Classification of Eukaryotic Diversity
2006
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
2004
Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction
2017
Fluorescence bleaching reveals asymmetric compartment formation prior to cell division in Caulobacter
2003 StandoutNobel
An Elaborate Classification of SNARE Proteins Sheds Light on the Conservation of the Eukaryotic Endomembrane System
2007
Prospects for inferring very large phylogenies by using the neighbor-joining method
2004 Standout
Opinion: Long Branch Attraction and Protist Phylogeny
2000
A Kingdom-Level Phylogeny of Eukaryotes Based on Combined Protein Data
2000 Science
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
2012 Standout
Testing Congruence in Phylogenomic Analysis
2008
Temporal and Spatial Regulation in Prokaryotic Cell Cycle Progression and Development
2003
Membrane Fusion: Grappling with SNARE and SM Proteins
2009 StandoutScienceNobel
The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria
2014
A Phylogenomic Study of Birds Reveals Their Evolutionary History
2008 StandoutScience
Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Data Sets
2008
Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies
2007
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
2011
Evolution of proteins and proteomes: a phylogenetics approach.
2007
Animal Evolution and the Molecular Signature of Radiations Compressed in Time
2005 Science
Works of Philippe Lopez being referenced
Network analyses structure genetic diversity in independent genetic worlds
2009
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium , Entamoeba , and Mastigamoeba
2002
EGN: a wizard for construction of gene and genome similarity networks
2013
Origin of replication of Thermotoga maritima
2000
Heterotachy, an Important Process of Protein Evolution
2002
Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli
2011
The Root of the Tree of Life in the Light of the Covarion Model
1999
Composition strand asymmetries in prokaryotic genomes: mutational bias and biased gene orientation
2001
Heterotachy and Functional Shift in Protein Evolution
2003
HF2: a double‐stranded DNA tailed haloarchaeal virus with a mosaic genome
2002
Establishment and maintenance of planar epithelial cell polarity by asymmetric cadherin bridges: A computer model
2005
Phylogenomics of Eukaryotes: Impact of Missing Data on Large Alignments
2004
Homeodomain proteins belong to the ancestral molecular toolkit of eukaryotes
2007
Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions
2000
Gene similarity networks provide tools for understanding eukaryote origins and evolution
2013
Carbon Fixation by Marine Ultrasmall Prokaryotes
2019