Citation Impact
Citing Papers
Recent Molecular Genetic Explorations of Caenorhabditis elegans MicroRNAs
2018 StandoutNobel
Trans-splicing of the C. elegans let-7 primary transcript developmentally regulates let-7 microRNA biogenesis and let-7 family microRNA activity
2019 StandoutNobel
Metastatic Heterogeneity of Breast Cancer Cells Is Associated with Expression of a Heterogeneous TGFβ-Activating miR424–503 Gene Cluster
2014
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
2021 StandoutNobel
Integrating Early Life Experience, Gene Expression, Brain Development, and Emergent Phenotypes
2014
Prediction of functional microRNA targets by integrative modeling of microRNA binding and target expression data
2019
DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity
2018 StandoutNobel
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Regulatory elements of Caenorhabditis elegans ribosomal protein genes
2012
Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila
2015
MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets
2015
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape
2013
A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets
2013
Regulation of microRNA function in animals
2018 Standout
A microRNA family exerts maternal control on sex determination in C. elegans
2017 StandoutNobel
Methods for Analysis of Transcription Factor DNA-Binding Specificity In Vitro
2011
Predicting effects of noncoding variants with deep learning–based sequence model
2015
Early childhood development coming of age: science through the life course
2016 Standout
Regulation of microRNA biogenesis
2014 Standout
Current prospects for RNA interference-based therapies
2011
Guidelines for the functional annotation of microRNAs using the Gene Ontology
2016
A network-biology perspective of microRNA function and dysfunction in cancer
2016
DAF-16 employs the chromatin remodeller SWI/SNF to promote stress resistance and longevity
2013 StandoutNobel
MicroRNA target site identification by integrating sequence and binding information
2013
Inflammation-induced repression of chromatin bound by the transcription factor Foxp3 in regulatory T cells
2014
RNA-based recognition and targeting: sowing the seeds of specificity
2017 StandoutNobel
Predicting variant deleteriousness in non-human species: applying the CADD approach in mouse
2018
Tissue mechanics modulate microRNA-dependent PTEN expression to regulate malignant progression
2014
Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor
2015
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
Computational Prediction of microRNA Targets
2015
cel-mir-237 and its homologue, hsa-miR-125b, modulate the cellular response to ionizing radiation
2016
Predicting microRNA targeting efficacy in Drosophila
2018
Identification and consequences of miRNA–target interactions — beyond repression of gene expression
2014
The Human Transcription Factors
2018 Standout
Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks
2014
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
DNA-Binding Specificities of Human Transcription Factors
2013
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
2013 StandoutNobel
Metazoan MicroRNAs
2018 Standout
High-performance medicine: the convergence of human and artificial intelligence
2018 Standout
A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2
2012
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
2012
The surveillance of pre-mRNA splicing is an early step in C. elegans RNAi of endogenous genes
2018 StandoutNobel
Negative regulation of Hif1a expression and TH17 differentiation by the hypoxia-regulated microRNA miR-210
2014
Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates
2015
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
MicroRNA Expression and Regulation in Human, Chimpanzee, and Macaque Brains
2011 StandoutNobel
Multiple small RNA pathways regulate the silencing of repeated and foreign genes in C. elegans
2013 StandoutNobel
Remodelling the extracellular matrix in development and disease
2014 Standout
Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
2009
Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting
2012
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
miRBase: annotating high confidence microRNAs using deep sequencing data
2013 Standout
Emerging Biological Principles of Metastasis
2017 Standout
Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing
2013
Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer
2017 StandoutNobel
Modulation of EZH2 expression in T cells improves efficacy of anti–CTLA-4 therapy
2018 StandoutNobel
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
2015 Standout
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
Alternative miRNA Biogenesis Pathways and the Interpretation of Core miRNA Pathway Mutants
2011
Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development
2011
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity
2024 StandoutNobel
Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response
2011
Absence of a simple code: how transcription factors read the genome
2014
Endogenous microRNA sponges: evidence and controversy
2016 Standout
Regulatory T Cell-Specific Epigenomic Region Variants Are a Key Determinant of Susceptibility to Common Autoimmune Diseases
2020 StandoutNobel
Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
2016 StandoutNobel
The microRNA miR-31 inhibits CD8+ T cell function in chronic viral infection
2017
Evaluation of methods for modeling transcription factor sequence specificity
2013
Vive la différence: biogenesis and evolution of microRNAs in plants and animals
2011
MicroRNA
2017 Standout
Global Analyses of the Effect of Different Cellular Contexts on MicroRNA Targeting
2014
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
2013 Standout
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
CADD: predicting the deleteriousness of variants throughout the human genome
2018 Standout
Widespread regulatory activity of vertebrate microRNA* species
2010
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
A wide repertoire of miRNA binding sites: prediction and functional implications
2011
Down-regulation of MicroRNA-31 in CD4+ T Cells Contributes to Immunosuppression in Human Sepsis by Promoting TH2 Skewing
2016
Electrospinning and Electrospun Nanofibers: Methods, Materials, and Applications
2019 Standout
Regulatory T Cells and Human Disease
2020 StandoutNobel
miRDB: an online database for prediction of functional microRNA targets
2019 Standout
Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G
2015
Predicting effective microRNA target sites in mammalian mRNAs
2015 Standout
Genetic and epigenetic variation in the lineage specification of regulatory T cells
2015
miRmap: Comprehensive prediction of microRNA target repression strength
2012
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
2019 Standout
MicroRNA-188 regulates age-related switch between osteoblast and adipocyte differentiation
2015
Geometric cues for directing the differentiation of mesenchymal stem cells
2010 Standout
Scalable mRNA and siRNA Lipid Nanoparticle Production Using a Parallelized Microfluidic Device
2021 StandoutNobel
Regulatory roles of IL-10–producing human follicular T cells
2019 StandoutNobel
miRBase: from microRNA sequences to function
2018 Standout
Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis
2013
Works of Phaedra Agius being referenced
Mechanical Strain Enhances Extracellular Matrix-Induced Gene Focusing and Promotes Osteogenic Differentiation of Human Mesenchymal Stem Cells Through an Extracellular-Related Kinase-Dependent Pathway
2007
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
2010
Inferring transcriptional and microRNA‐mediated regulatory programs in glioblastoma
2012
High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions
2010
Computational and experimental identification of mirtrons inDrosophila melanogasterandCaenorhabditis elegans
2010
Sequence and chromatin determinants of cell-type–specific transcription factor binding
2012
Ranking Genes by Their Co‐expression to Subsets of Pathway Members
2009