Peter Tiffin

Widespread Parallel Evolution in Sticklebacks by Repeated Fixation of Ectodysplasin Alleles

Insights into the Maize Pan-Genome and Pan-Transcriptome  

Genetics of Hybrid Incompatibility Between Lycopersicon esculentum and L. hirsutum

Rapid responses of soil microorganisms improve plant fitness in novel environments

Overdominant quantitative trait loci for yield and fitness in tomato

Pattern of diversity in the genomic region near the maize domestication gene tb1

Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection

Accelerating extinction risk from climate change

High biological species diversity in the arctic flora

Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese cabbage

The effect of elevated CO2 on growth and competition in experimental phytoplankton communities

An Expanded View of Complex Traits: From Polygenic to Omnigenic

Siglecs and their roles in the immune system

SIFT web server: predicting effects of amino acid substitutions on proteins

A Signaling Protease Required for Melanization in Drosophila Affects Resistance and Tolerance of Infections

Rewiring of the Fruit Metabolome in Tomato Breeding

SpedeSTEM: a rapid and accurate method for species delimitation

Molecular Evolution of FLORICAULA/LEAFY Orthologs in the Andropogoneae (Poaceae)

Cryptic species as a window on diversity and conservation

A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

Going back to the roots: the microbial ecology of the rhizosphere

Molecular Evolution of the Opaque-2 Gene in Zea mays L.

Plant–microbiome interactions: from community assembly to plant health

Evolutionary Dynamics of Human Toll-Like Receptors and Their Different Contributions to Host Defense

EVOLUTIONARY DYNAMICS OF PATHOGEN RESISTANCE AND TOLERANCE

Climate change and evolution: disentangling environmental and genetic responses

Climate-smart soils

FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis)

Evolution of the VvMybA gene family, the major determinant of berry colour in cultivated grapevine (Vitis vinifera L.)

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

Genetic Variation Promotes Long‐Term Coexistence of Brassica nigra and Its Competitors

Deleterious amino acid polymorphisms in Arabidopsis thaliana and rice

Carotenoid biosynthetic pathway: molecular phylogenies and evolutionary behavior of crt genes in eubacteria

The Coevolution of Virulence: Tolerance in Perspective

The Human Transcription Factors

The Molecular Genetics of Crop Domestication

The molecular ecologist's guide to expressed sequence tags

Why intraspecific trait variation matters in community ecology

Structural Determinants of the Rate of Protein Evolution in Yeast

The Genetic Structure of Domestic Rabbits

Utilizing Spatial Demographic and Life History Variation to Optimize Sustainable Yield of a Temperate Sex-Changing Fish

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing

System-wide Genomic and Biochemical Comparisons of Sialic Acid Biology Among Primates and Rodents

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

Presence–Absence Variation in A. thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints

High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes

Multilocus Analysis of Nucleotide Variation of Oryza sativa and Its Wild Relatives: Severe Bottleneck during Domestication of Rice

Hybridization as an invasion of the genome

Climate-Induced Range Shifts and Possible Hybridisation Consequences in Insects

Molecular Evolution in Large Genetic Networks: Does Connectivity Equal Constraint?

Detecting the number of clusters of individuals using the software structure: a simulation study

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

The pangenome of an agronomically important crop plant Brassica oleracea

Molecular Population Genetics and the Search for Adaptive Evolution in Plants

Spatially explicit Bayesian clustering models in population genetics

Climate change and evolutionary adaptation

Meeting the Global Food Demand of the Future by Engineering Crop Photosynthesis and Yield Potential

Humanized Foxp2 specifically affects cortico-basal ganglia circuits

Metabolite-based genome-wide association studies in plants

GCTA: A Tool for Genome-wide Complex Trait Analysis

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

Parent-Dependent Loss of Gene Silencing during Interspecies Hybridization

RESURRECTING THE ROLE OF TRANSCRIPTION FACTOR CHANGE IN DEVELOPMENTAL EVOLUTION

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure

Immunity to fungal infections

Two ways to survive infection: what resistance and tolerance can teach us about treating infectious diseases

Parallel Evolution and Inheritance of Quantitative Traits

Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

Evolution of prey in ecological time reduces the effect size of predators in experimental microcosms

Belowground biodiversity and ecosystem functioning

ADAPTATION TO DIFFERENT RATES OF ENVIRONMENTAL CHANGE INCHLAMYDOMONAS

Cyanobacterial blooms

Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies

Characterization and Effects of the Replicated Flowering Time Gene FLC in Brassica rapa

Genetic structure and domestication history of the grape

Over-expressing the C3 photosynthesis cycle\nenzyme Sedoheptulose-1-7 Bisphosphatase\nimproves photosynthetic carbon gain and yield\nunder fully open air CO2 fumigation (FACE)

Oil platforms off California are among the most productive marine fish habitats globally

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

Advances in BAC-Based Physical Mapping and Map Integration Strategies in Plants

Soil microbes alter plant fitness under competition and drought

Ecological and Evolutionary Consequences of Multispecies Plant-Animal Interactions

Does parental divergence predict reproductive compatibility?

Evolution of genes and taxa: a primer

Diversifying Carotenoid Biosynthetic Pathways by Directed Evolution

The metacommunity concept: a framework for multi‐scale community ecology

THE EVOLUTION OF PARASITES IN RESPONSE TO TOLERANCE IN THEIR HOSTS: THE GOOD, THE BAD, AND APPARENT COMMENSALISM

Natural variation identifies genes affecting drought-induced abscisic acid accumulation in Arabidopsis thaliana

Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations

Disease Tolerance as a Defense Strategy

Leaf‐herbivore attack reduces carbon reserves and regrowth from the roots via jasmonate and auxin signaling

Evolution of a Pathway to Novel Long-Chain Carotenoids

Simulated climate change provokes rapid genetic change in the Mediterranean shrub Fumana thymifolia

The modularity of pollination networks

Estimating genetic parameters in natural populations using the ‘animal model’

Decomposing health: tolerance and resistance to parasites in animals

Disentangling Genetic Variation for Resistance and Tolerance to Infectious Diseases in Animals

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective

A general species delimitation method with applications to phylogenetic placements

Microbial phylotype composition and diversity predicts plant productivity and plant–soil feedbacks

Towards plant pangenomics

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

The physiology of plant responses to drought

Replacing bare fallows with cover crops in fertilizer-intensive cropping systems: A meta-analysis of crop yield and N dynamics

Flavonoid Biosynthesis. A Colorful Model for Genetics, Biochemistry, Cell Biology, and Biotechnology

Biological identifications through DNA barcodes

Abundant Genetic Variation + Strong Selection = Multivariate Genetic Constraints: A Geometric View of Adaptation

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes    

Trade‐offs in community ecology: linking spatial scales and species coexistence

Conceptual issues in local adaptation

ATP-sensitive potassium channel (K _ATP )–dependent regulation of cardiotropic viral infections

Sequence diversity and haplotype associations with phenotypic responses to crowding: GIGANTEA affects fruit set in Arabidopsis thaliana

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

GEOGRAPHIC VARIATION IN ADAPTATION AT THE MOLECULAR LEVEL: A CASE STUDY OF PLANT IMMUNITY GENES

PATTERNS OF REPRODUCTIVE ISOLATION IN THREE ANGIOSPERM GENERA

STABILIZING MECHANISMS IN A LEGUME-RHIZOBIUM MUTUALISM

Validating Genome-Wide Association Candidates Controlling Quantitative Variation in Nodulation

Strong ecological but weak evolutionary effects of elevated CO₂ on a recombinant inbred population of Arabidopsis thaliana

MEASURING TOLERANCE TO HERBIVORY: ACCURACY AND PRECISION OF ESTIMATES MADE USING NATURAL VERSUS IMPOSED DAMAGE

Evolution in ecological field experiments: implications for effect size

The quest for adaptive evolution: a theoretical challenge in a maze of data

Molecular evolution of plant immune system genes

Testing for Environmentally Induced Bias in Phenotypic Estimates of Natural Selection: Theory and Practice

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

The Geography of Demography: Long-Term Demographic Studies and Species Distribution Models Reveal a Species Border Limited by Adaptation

Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway

Coding Sequence Divergence Between Two Closely Related Plant Species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis

Elevated carbon dioxide concentrations indirectly affect plant fitness by altering plant tolerance to herbivory

Molecular Evolution of the Wound-Induced Serine Protease Inhibitor wip1 in Zea and Related Genera

Nucleotide diversity and linkage disequilibrium in balsam poplar (Populus balsamifera)

Genomic diversity, population structure, and migration following rapid range expansion in the Balsam Poplar,Populus balsamifera

Genetic Constraints and Selection Acting on Tolerance to Herbivory in the Common Morning Glory Ipomoea purpurea

COMPETITION AND TIME OF DAMAGE AFFECT THE PATTERN OF SELECTION ACTING ON PLANT DEFENSE AGAINST HERBIVORES

Are Tolerance, Avoidance, and Antibiosis Evolutionarily and Ecologically Equivalent Responses of Plants to Herbivores?

Response of Corn Grain Yield to Early and Late Killed Red Clover Green Manure and Subirrigation

Coding Sequence Divergence Between Two Closely Related Plant Species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis

Population Genetic Evidence for Rapid Changes in Intraspecific Diversity and Allelic Cycling of a Specialist Defense Gene in ZeaSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY320258–320280, AY52550, AY52551, AY52552, AY52553, AY52554, AY52555, AY52556, AY52557, AY52558, AY52559, and AY549598, AY549599, AY549600, AY549601, AY549602, AY549603, AY549604, AY549605, AY549606, AY549607, AY549608, AY549609, AY549610, AY549611, AY549612, AY549613, AY549614, AY549615, AY549616, AY549617, AY549618, AY549619, AY549620, AY549621, AY549622, AY549623, AY549624, AY549625, AY549626, AY549627, AY549628, AY549629, AY549630, AY549631, AY549632, AY549633, AY549634, AY549635, AY549636, AY549637, AY549638.

Phylogenetic Signal Variation in the Genomes of Medicago (Fabaceae)

Asymmetrical crossing barriers in angiosperms

Comparative Evolutionary Histories of Chitinase Genes in the Genus Zea and Family PoaceaeSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY532721, AY532722, AY532723, AY532724, AY532725, AY532726, AY532727, AY532728, AY532729, AY532730, AY532731, AY532732, AY532733, AY532734, AY532735, AY532736, AY532737, AY532738, AY532739, AY532740, AY532741, AY532742, AY532743, AY532744, AY532745, AY532746, AY532747, AY532748, AY532749, AY532750, AY532751, AY532752, AY532753, AY532754, AY532755, AY532756, AY532757, AY532758, AY532759, AY532760, AY532761, AY532762, AY532763, AY532764, AY532765, AY532766, AY532767, AY532768, AY532769, AY532770, AY532771, AY532772, AY532773, AY532774, AY532775, AY532776, AY532777, AY532778, AY532779, AY532780, AY532781, AY532782, AY532783, AY532784, AY532785, AY532786, AY532787, AY532788.

Mechanisms of tolerance to herbivore damage:what do we know?

Reshaping of the maize transcriptome by domestication

Species interactions in a changing environment: Elevated CO2 alters the ecological and potential evolutionary consequences of competition

Sequence Diversity in the Tetraploid Zea perennis and the Closely Related Diploid Z. diploperennis: Insights From Four Nuclear Loci

High‐density genome‐wide association mapping implicates an F‐box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches

Context dependence in the coevolution of plant and rhizobial mutualists