Citation Impact
Citing Papers
Nature of the protein universe
2009 StandoutNobel
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
2012 StandoutScienceNobel
Navigating the protein fitness landscape with Gaussian processes
2012 StandoutNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Consistent blind protein structure generation from NMR chemical shift data
2008 StandoutNobel
Guidelines for the Management of Spontaneous Intracerebral Hemorrhage
2015 Standout
Voltage sensor conformations in the open and closed states in rosetta structural models of K + channels
2006 StandoutNobel
Improved protein structure prediction using predicted interresidue orientations
2020 StandoutNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Computational Thermostabilization of an Enzyme
2005 StandoutScienceNobel
Automated de novo prediction of native-like RNA tertiary structures
2007 StandoutNobel
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C α only models, Alternative alignments, and Non-sequential alignments
2013
Modeling structurally variable regions in homologous proteins with rosetta
2004 StandoutNobel
Local moves: An efficient algorithm for simulation of protein folding
1995
Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set
2011 StandoutNobel
In vitro antimicrobial activity of silver-processed catheters for neurosurgery
2009
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
Recognizing Native Folds by the Arrangement of Hydrophobic and Polar Residues
1995 StandoutNobel
Perspectives in protein-fold recognition
1997
Polar and nonpolar atomic environments in the protein core: Implications for folding and binding
1994
What is the value added by human intervention in protein structure prediction?
2001
Comprehensive Evaluation of Protein Structure Alignment Methods: Scoring by Geometric Measures
2005 StandoutNobel
FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties11Edited by B. Honig
2001
An accurate, residue‐level, pair potential of mean force for folding and binding based on the distance‐scaled, ideal‐gas reference state
2004
Combination of threading potentials and sequence profiles improves fold recognition 1 1Edited by B. Honig
2000
A simple method to generate non-trivial alternate alignments of protein sequences
1991
Dopamine covalently modifies and functionally inactivates parkin
2005
A Double S Shape Provides the Structural Basis for the Extraordinary Binding Specificity of Dscam Isoforms
2008 StandoutNobel
LGA: a method for finding 3D similarities in protein structures
2003
De novo protein design. I. in search of stability and specificity
1999 StandoutNobel
Silver as Antibacterial Agent: Ion, Nanoparticle, and Metal
2012 Standout
Structure of the Type VI Secretion System Contractile Sheath
2015 StandoutNobel
Improving the quality of twilight‐zone alignments
2000
Automated prediction of CASP-5 structures using the Robetta server
2003 StandoutNobel
GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences
1999
Folding proteins with a simple energy function and extensive conformational searching
1996
Factors affecting the ability of energy functions to discriminate correct from incorrect folds
1997 StandoutNobel
Verification of protein structures: Patterns of nonbonded atomic interactions
1993 Standout
MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
2002
Functional Inferences from Blind ab Initio Protein Structure Predictions
2001 StandoutNobel
MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004 Standout
Analysis and assessment of ab initio three‐dimensional prediction, secondary structure, and contacts prediction
1999
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Empirical potentials and functions for protein folding and binding
1997
Efficacy of silver-bearing external ventricular drainage catheters: a retrospective analysis
2009
MaxSub: an automated measure for the assessment of protein structure prediction quality
2000
In search for more accurate alignments in the twilight zone
2002
Rational design of α-helical tandem repeat proteins with closed architectures
2015 StandoutNatureNobel
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
A Position-Specific Distance-Dependent Statistical Potential for Protein Structure and Functional Study
2012
Potential energy functions for threading
1996
FRankenstein becomes a cyborg: The automatic recombination and realignment of fold recognition models in CASP6
2005
The coming of age of de novo protein design
2016 StandoutNatureNobel
Assessment of protein models with three-dimensional profiles
1992 StandoutNature
Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all‐atom statistical potential and the AMBER force field with the Generalized Born solvation model
2003
An improved pair potential to recognize native protein folds
1994
A new approach to protein fold recognition
1992 Nature
Methods of Protein Structure Comparison
2011
Large-scale comparison of protein sequence alignment algorithms with structure alignments
2000
Super-resolution biomolecular crystallography with low-resolution data
2010 StandoutNatureNobel
Recognition of errors in three‐dimensional structures of proteins
1993 Standout
Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures
1993
Metallic Silver Fragments Cause Massive Tissue Loss in the Mouse Brain
2010
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
Using a Hydrophobic Contact Potential to Evaluate Native and Near-native Folds Generated by Molecular Dynamics Simulations
1996 StandoutNobel
From words to literature in structural proteomics
2003 Nature
Successful ab initio prediction of the tertiary structure of NK‐lysin using multiple sequences and recognized supersecondary structural motifs
1997
3D‐SHOTGUN: A novel, cooperative, fold‐recognition meta‐predictor
2003
Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction
2002
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Assessment of fold recognition predictions in CASP6
2005
Template-based modeling and free modeling by I-TASSER in CASP7
2007
Structure-derived potentials and protein simulations
1996
Protein structure alignment beyond spatial proximity
2013
CASP5 assessment of fold recognition target predictions
2003
CAFASP‐1: Critical assessment of fully automated structure prediction methods
1999
A surprising simplicity to protein folding
2000 StandoutNatureNobel
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions
1997 StandoutNobel
Energy Functions that Discriminate X-ray and Near-native Folds from Well-constructed Decoys
1996 StandoutNobel
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement
2003 StandoutNobel
Statistics of sequence-structure threading
1995
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction 1 1Edited by F. Cohen
1998
Assessment of progress over the CASP experiments
2003
PROTEIN FOLDING: The Endgame
1997 StandoutNobel
Guidelines for the Early Management of Patients With Acute Ischemic Stroke
2013 Standout
New Strategies in the Development of Antimicrobial Coatings: The Example of Increasing Usage of Silver and Silver Nanoparticles
2011
Critical assessment of methods of protein structure prediction (CASP)-round V
2003
DALI and the persistence of protein shape
2019
Ab Initio Protein Structure Prediction: Progress and Prospects
2001 StandoutNobel
Toward High-Resolution de Novo Structure Prediction for Small Proteins
2005 StandoutScienceNobel
APDB: a novel measure for benchmarking sequencealignment methods without reference alignments
2003
Mussel-Inspired Surface Chemistry for Multifunctional Coatings
2007 StandoutScience
Extracting knowledge-based energy functions from protein structures by error rate minimization: Comparison of methods using lattice model
2000 StandoutNobel
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
Catalytic Asymmetric Hydroalkoxylation of C–C Multiple Bonds
2021 StandoutNobel
MaxBench: evaluation of sequence and structure comparison methods
2002
Guidelines for the Management of Spontaneous Intracerebral Hemorrhage
2010 Standout
Structure classification-based assessment of CASP3 predictions for the fold recognition targets
1999
Improved recognition of native-like protein structures using a family of designed sequences
2002 StandoutNobel
Contribution of hydrogen bonds to protein stability
2014
The mammalian central nervous synaptic cleft contains a high density of periodically organized complexes
2005 StandoutNobel
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
2003 StandoutScienceNobel
Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction
1999
A review of the antibacterial effects of silver nanomaterials and potential implications for human health and the environment
2010 Standout
Progress in Modeling of Protein Structures and Interactions
2005 StandoutScienceNobel
Comparative Protein Structure Modeling of Genes and Genomes
2000 Standout
Protein Structure Prediction and Structural Genomics
2001 StandoutScienceNobel
Nano-silver – a review of available data and knowledge gaps in human and environmental risk assessment
2009 Standout
A unified statistical framework for sequence comparison and structure comparison
1998 StandoutNobel
CAFASP-1: Critical assessment of fully automated structure prediction methods
1999
GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity
2014
Computational Design of Stable and Soluble Biocatalysts
2018
Residue – Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading
1996
Thrombolysis for acute ischaemic stroke
2014
Elicitation of structure-specific antibodies by epitope scaffolds
2010 StandoutNobel
Clustering of low-energy conformations near the native structures of small proteins
1998 StandoutNobel
Works of Peter Lackner being referenced
MAESTRO - multi agent stability prediction upon point mutations
2015
An attempt to analyse progress in fold recognition from CASP1 to CASP3
1999
Soluble Endoglin and Transforming Growth Factor-β<sub>1</sub> and the Development of Vasospasm after Spontaneous Subarachnoid Hemorrhage: A Pilot Study
2011
Comparative Analysis of Protein Structure Alignments
2007
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy 1 1Edited by B. Honig
2000
Silver segregation and bacterial growth of intraventricular catheters impregnated with silver nanoparticles in cerebrospinal fluid drainages
2008
Progress in fold recognition
1995
Assembly of polypeptide and protein backbone conformations from low energy ensembles of short fragments: Development of strategies and construction of models for myoglobin, lysozyme, and thymosin β4
1992
Pathogenic mutations inactivate parkin by distinct mechanisms
2004
Helmholtz free energies of atom pair interactions in proteins
1996
The Bet v 1 fold: an ancient, versatile scaffold for binding of large, hydrophobic ligands
2008
Identification of native protein folds amongst a large number of incorrect models
1990
Assessment of the CASP4 fold recognition category
2001
ProSup: a refined tool for protein structure alignment
2000
Accuracy analysis of multiple structure alignments
2009
Efficacy of Silver Nanoparticles-Impregnated External Ventricular Drain Catheters in Patients with Acute Occlusive Hydrocephalus
2008
Automated large scale evaluation of protein structure predictions
1999
Sustained performance of knowledge‐based potentials in fold recognition
1999
Prophylactic, Endovascularly Based, Long-Term Normothermia in ICU Patients With Severe Cerebrovascular Disease
2009
Sustained performance of knowledge-based potentials in fold recognition
1999
An attempt to analyse progress in fold recognition from CASP1 to CASP3
1999