Citation Impact
Citing Papers
Simplified and representative bacterial community of maize roots
2017
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
2017 Standout
The biomass distribution on Earth
2018 Standout
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
2015 Standout
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
2013 Standout
Swarm v2: highly-scalable and high-resolution amplicon clustering
2015
Co-occurrence patterns in aquatic bacterial communities across changing permafrost landscapes
2016
Microbial co-occurrence patterns in deep Precambrian bedrock fracture fluids
2016
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
2015
ColabFold: making protein folding accessible to all
2022 Standout
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
2014 Standout
cytoHubba: identifying hub objects and sub-networks from complex interactome
2014 Standout
Molecular ecological network analyses
2012 Standout
Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil
2016
Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls
2016 Standout
Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes
2013
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Marine microbial community dynamics and their ecological interpretation
2015
A Primer on Metagenomics
2010
Modeling microbial communities: Current, developing, and future technologies for predicting microbial community interaction
2012
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
Soil bacterial networks are less stable under drought than fungal networks
2018
The plastic in microplastics: A review
2017 Standout
A Genomic Perspective on the Shortcomings of Mitochondrial DNA for “Barcoding” Identification
2006
Microbiome Datasets Are Compositional: And This Is Not Optional
2017 Standout
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
2016 Standout
Network-based metabolic analysis and microbial community modeling
2016
DNA Barcoding and Taxonomy in Diptera: A Tale of High Intraspecific Variability and Low Identification Success
2006 Standout
Microbial interactions and community assembly at microscales
2016
Microplastics in freshwater systems: A review of the emerging threats, identification of knowledge gaps and prioritisation of research needs
2015 Standout
Microplastics in freshwater systems: A review on occurrence, environmental effects, and methods for microplastics detection
2017 Standout
Microbial community structure and its functional implications
2009 Nature
Microbial Co-occurrence Relationships in the Human Microbiome
2012 Standout
Metagenomic biomarker discovery and explanation
2011 Standout
The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
2010 Standout
IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries
2014
Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
2017
Plastic Pollution in the World's Oceans: More than 5 Trillion Plastic Pieces Weighing over 250,000 Tons Afloat at Sea
2014 Standout
Differential abundance analysis for microbial marker-gene surveys
2013 Standout
Environmental factors influencing the development and spread of antibiotic resistance
2017 Standout
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Correlation Network Analysis Applied to Complex Biofilm Communities
2011
Microbial interactions: from networks to models
2012 Standout
Current understanding of the human microbiome
2018 Standout
Predicting Bacterial Community Assemblages Using an Artificial Neural Network Approach
2014
Protists: Puppet Masters of the Rhizosphere Microbiome
2018
Review of antibiotic resistance in China and its environment
2017 Standout
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
2013 Standout
Predicting bacterial community assemblages using an artificial neural network approach
2012
Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes
2016
Keystone taxa as drivers of microbiome structure and functioning
2018 Standout
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
2014 Standout
Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions
2011
Soil microbiomes and climate change
2019 Standout
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
The human skin microbiome
2018 Standout
Global biogeography of highly diverse protistan communities in soil
2012
New Pathways and Processes in the Global Nitrogen Cycle
2011
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
2015 Standout
Soil quality – A critical review
2018 Standout
Synthetic Statistical Approach Reveals a High Degree of Richness of Microbial Eukaryotes in an Anoxic Water Column
2006
Plastic debris in the open ocean
2014 Standout
2015 Standout
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
2016
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
2018 Standout
Microbial Metagenomics: Beyond the Genome
2010
Taxon interactions control the distributions of cryoconite bacteria colonizing a High Arctic ice cap
2016
Coherent dynamics and association networks among lake bacterioplankton taxa
2011
Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
2008 Standout
Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China
2016
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight
2013
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
An integrated approach to fast and informative morphological vouchering of nematodes for applications in molecular barcoding
2005
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
2014
Wireless Sensor Networks for Ecology
2005
Microbial diversity in the deep sea and the underexplored “rare biosphere”
2006 Standout
Mechanism of Nitrogen Fixation by Nitrogenase: The Next Stage
2014 Standout
Plant cultivars imprint the rhizosphere bacterial community composition and association networks
2017
Structure, Variation, and Co-occurrence of Soil Microbial Communities in Abandoned Sites of a Rare Earth Elements Mine
2016
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
2012 Standout
Fundamentals of Microbial Community Resistance and Resilience
2012
Influence of resistance breeding in common bean on rhizosphere microbiome composition and function
2017
Microbial diversity and ecological networks as indicators of environmental quality
2017
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
2013
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
Microbial oceanography of the dark ocean's pelagic realm
2009
Back to the basics: The need for ecophysiological insights to enhance our understanding of microbial behaviour in the rhizosphere
2013
Plastic and Human Health: A Micro Issue?
2017 Standout
Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
2023
Soundscape Ecology: The Science of Sound in the Landscape
2011 Standout
Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans
2015
Life in the “Plastisphere”: Microbial Communities on Plastic Marine Debris
2013 Standout
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
2015
Network topology reveals high connectance levels and few key microbial genera within soils
2014
Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow
2016
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience
2013
The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome
2015
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
2016
Works of Peter D. Countway being referenced
Marine bacterial, archaeal and protistan association networks reveal ecological linkages
2011
The Growing Contributions of Molecular Biology and Immunology to Protistan Ecology: Molecular Signatures as Ecological Tools1
2004
Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream)
2007
Protistan Diversity Estimates Based on 18S rDNA from Seawater Incubations in the Western North Atlantic1
2005
Marine Protistan Diversity
2011
Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology
2009
Abundance and Distribution of Ostreococcus sp. in the San Pedro Channel, California, as Revealed by Quantitative PCR
2006
Depth matters: Microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries
2010
Seasonal analysis of protistan community structure and diversity at the USC Microbial Observatory (San Pedro Channel, North Pacific Ocean)
2010
Investigating Microbial Eukaryotic Diversity from a Global Census: Insights from a Comparison of Pyrotag and Full-Length Sequences of 18S rRNA Genes
2014
Protists are microbes too: a perspective
2008