Citation Impact
Citing Papers
Confirmation of intersubunit connectivity and topology of designed protein complexes by native MS
2018 StandoutNobel
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters
2021
A deep learning genome-mining strategy for biosynthetic gene cluster prediction
2019
antiSMASH 6.0: improving cluster detection and comparison capabilities
2021 Standout
Diversity oriented clicking delivers β-substituted alkenyl sulfonyl fluorides as covalent human neutrophil elastase inhibitors
2022 StandoutNobel
PARP inhibitors: Synthetic lethality in the clinic
2017 StandoutScience
The diverse and expanding role of mass spectrometry in structural and molecular biology
2016
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
From Hype to Hope: The Gut Microbiota in Enteric Infectious Disease
2015
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
CRISPy-web: An online resource to design sgRNAs for CRISPR applications
2016
Genomics-driven discovery of the pneumocandin biosynthetic gene cluster in the fungus Glarea lozoyensis
2013
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
2023 Standout
Toward Awakening Cryptic Secondary Metabolite Gene Clusters in Filamentous Fungi
2012
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
The re-emergence of natural products for drug discovery in the genomics era
2015 Standout
Elements of cancer immunity and the cancer–immune set point
2017 StandoutNature
Dietary tryptophan alleviates dextran sodium sulfate-induced colitis through aryl hydrocarbon receptor in mice
2017
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
2016
eIF3 targets cell-proliferation messenger RNAs for translational activation or repression
2015 Nature
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers
2013
Interactions between the microbiota, immune and nervous systems in health and disease
2017 Standout
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
2017
Microbial tryptophan catabolites in health and disease
2018 Standout
BRCAness revisited
2016
Mass spectrometry guided structural biology
2016
Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3
2015 StandoutNobel
DEAD‐box protein DDX3 associates with eIF4F to promote translation of selected mRNAs
2012
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
2014 StandoutNature
Metabolomics methods for the synthetic biology of secondary metabolism
2012
Metagenomic Approaches for Exploiting Uncultivated Bacteria as a Resource for Novel Biosynthetic Enzymology
2013
Architecture of the human GATOR1 and GATOR1–Rag GTPases complexes
2018 Nature
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
2016 Standout
New kids on the block: novel informatics methods for natural product discovery
2014
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
2017 Standout
Hallmarks of aging: An expanding universe
2023 Standout
The Human Intestinal Microbiome in Health and Disease
2016 Standout
FUS binds the CTD of RNA polymerase II and regulates its phosphorylation at Ser2
2012 Nobel
Discovery of microbial natural products by activation of silent biosynthetic gene clusters
2015
Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells
2013
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
2015 Standout
Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae
2013
LTP Requires a Unique Postsynaptic SNARE Fusion Machinery
2013 StandoutNobel
Impact of the Gut Microbiota on Intestinal Immunity Mediated by Tryptophan Metabolism
2018
mTOR at the nexus of nutrition, growth, ageing and disease
2020 Standout
Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis
2015 Standout
Biosynthetic Pathway Connects Cryptic Ribosomally Synthesized Posttranslationally Modified Peptide Genes with Pyrroloquinoline Alkaloids
2016
The Science of Antibiotic Discovery
2020 Standout
Mining the microbial dark matter
2015 Nature
The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function
2022
Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease
2016 Standout
mTOR Signaling in Growth, Metabolism, and Disease
2017 Standout
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
2017
Bioactivity‐Guided Genome Mining Reveals the Lomaiviticin Biosynthetic Gene Cluster in Salinispora tropica
2013
Lipid-Anchored SNAREs Lacking Transmembrane Regions Fully Support Membrane Fusion during Neurotransmitter Release
2013 StandoutNobel
Diet–microbiota interactions as moderators of human metabolism
2016 StandoutNature
Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
2018 Nature
Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells
2020
Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages
2018
Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences
2020
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
Enterochromaffin Cells Are Gut Chemosensors that Couple to Sensory Neural Pathways
2017 StandoutNobel
Control of Brain Development, Function, and Behavior by the Microbiome
2015
Antibiotic-Induced Changes in the Intestinal Microbiota and Disease
2016
Detecting Sequence Homology at the Gene Cluster Level with MultiGeneBlast
2013
The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production
2016
PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
2017
Leucine-Rich Repeat Transmembrane Proteins Are Essential for Maintenance of Long-Term Potentiation
2013 StandoutNobel
Automated structure prediction of trans-acyltransferase polyketide synthase products
2019
SZT2 dictates GATOR control of mTORC1 signalling
2017 Nature
A computational framework to explore large-scale biosynthetic diversity
2019
5′ UTR m6A Promotes Cap-Independent Translation
2015 Standout
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation
2015 Standout
Synthetic lethality: the road to novel therapies for breast cancer
2016
Regulation of proteasome assembly and activity in health and disease
2018
In silico tools for the analysis of antibiotic biosynthetic pathways
2014
Peptidomic discovery of short open reading frame–encoded peptides in human cells
2012
Class of cyclic ribosomal peptide synthetic genes in filamentous fungi
2015
Gut Microbiota Regulation of Tryptophan Metabolism in Health and Disease
2018 Standout
The PI3K Pathway in Human Disease
2017 Standout
The Ded1/DDX3 subfamily of DEAD-box RNA helicases
2014
Construction of a microbial natural product library for chemical biology studies
2012
Chemical ecology of antibiotic production by actinomycetes
2017
Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products
2014
Protein Sequence Editing of SKN-1A/Nrf1 by Peptide:N-Glycanase Controls Proteasome Gene Expression
2019 StandoutNobel
Lessons from the Past and Charting the Future of Marine Natural Products Drug Discovery and Chemical Biology
2012
Antibacterial drug discovery in the resistance era
2016 StandoutNature
Proteome-wide covalent ligand discovery in native biological systems
2016 Nature
IMG/M: integrated genome and metagenome comparative data analysis system
2016
Computational approaches to natural product discovery
2015
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery
2017
Improved Lanthipeptide Detection and Prediction for antiSMASH
2014
Bioactive compounds synthesized by non-ribosomal peptide synthetases and type-I polyketide synthases discovered through genome-mining and metagenomics
2012
Proteomics and integrative omic approaches for understanding host–pathogen interactions and infectious diseases
2017
ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining
2020
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters
2017
Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials
2015 Standout
eIF3d is an mRNA cap-binding protein that is required for specialized translation initiation
2016 StandoutNatureNobel
Adoptive cell transfer as personalized immunotherapy for human cancer
2015 StandoutScience
BiG-FAM: the biosynthetic gene cluster families database
2020
Lysosomal activity regulatesCaenorhabditis elegansmitochondrial dynamics through vitamin B12 metabolism
2020 StandoutNobel
Small molecules from the human microbiota
2015 Science
Molecular Docking and Structure-Based Drug Design Strategies
2015 Standout
Sequence-based classification of type II polyketide synthase biosynthetic gene clusters for antiSMASH
2019
The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota
2021
Protein Ensemble Generation Through Variational Autoencoder Latent Space Sampling
2024 StandoutNobel
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
2018 StandoutScienceNobel
Covalent docking using autodock: Two‐point attractor and flexible side chain methods
2015
Linking genomics and metabolomics to chart specialized metabolic diversity
2020
Unlocking Reactivity of TrpB: A General Biocatalytic Platform for Synthesis of Tryptophan Analogues
2017 StandoutNobel
The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters
2018
Natural product drug discovery in the genomic era: realities, conjectures, misconceptions, and opportunities
2018
Culture-independent discovery of natural products from soil metagenomes
2015
DEAD-Box Helicases: Sensors, Regulators, and Effectors for Antiviral Defense
2020
Identification of simple arylfluorosulfates as potent agents against resistant bacteria
2021 StandoutNobel
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery
2012
IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase
2019
DEAD-box helicases: the Yin and Yang roles in viral infections
2018
Neoantigens in cancer immunotherapy
2015 StandoutScience
Advances in the arsenal of tools available enabling the discovery of novel lantibiotics with therapeutic potential
2014
The evolution of genome mining in microbes – a review
2016
Sestrins Inhibit mTORC1 Kinase Activation through the GATOR Complex
2014
Metabolomic Profiling and Genomic Study of a Marine Sponge-Associated Streptomyces sp.
2014
Charting an Unexplored Streptococcal Biosynthetic Landscape Reveals a Unique Peptide Cyclization Motif
2018
“Inverse Drug Discovery” Strategy To Identify Proteins That Are Targeted by Latent Electrophiles As Exemplified by Aryl Fluorosulfates
2017 StandoutNobel
TOUCAN: a framework for fungal biosynthetic gene cluster discovery
2020
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes
2020
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
2019 Standout
Works of Peter Cimermančič being referenced
IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
2015
Molecular Architecture and Function of the SEA Complex, a Modulator of the TORC1 Pathway
2014
The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress
2017
Molecular Architecture of the 40S⋅eIF1⋅eIF3 Translation Initiation Complex
2014
Covalent docking of large libraries for the discovery of chemical probes
2014
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
2011 Standout
CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites
2016
SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signalling receptors
2011
Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
2014
Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions
2014
Host Cell Interactome of HIV-1 Rev Includes RNA Helicases Involved in Multiple Facets of Virus Production
2011
Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine
2014
The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes
2011
A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics
2014
A mass spectrometry–guided genome mining approach for natural product peptidogenomics
2011
A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis
2014
Scoring Large‐Scale Affinity Purification Mass Spectrometry Datasets with MiST
2015