Citation Impact
Citing Papers
Bacterial Secretion Systems with an Emphasis on the Chlamydial Type III Secretion System
2010
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
The biomass distribution on Earth
2018 Standout
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
2012 Standout
Roary: rapid large-scale prokaryote pan genome analysis
2015 Standout
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
Ammonia-Oxidising Archaea – Physiology, Ecology and Evolution
2010
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
2021 Standout
OrthoFinder: phylogenetic orthology inference for comparative genomics
2019 Standout
Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation
2012
Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland
2012
Discovery of chlamydial peptidoglycan reveals bacteria with murein sacculi but without FtsZ
2013
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
MIPS: analysis and annotation of proteins from whole genomes in 2005
2005
Environmental Variables Shaping the Ecological Niche of Thaumarchaeota in Soil: Direct and Indirect Causal Effects
2015
A flagellum-specific chaperone facilitates assembly of the core type III export apparatus of the bacterial flagellum
2017 StandoutNobel
HMMER web server: interactive sequence similarity searching
2011 Standout
The archaeal ‘TACK’ superphylum and the origin of eukaryotes
2011
Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis
2011
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
Human Genetics Shape the Gut Microbiome
2014 Standout
The gut microbiota, bacterial metabolites and colorectal cancer
2014 Standout
Comparative Genomics Suggests an Independent Origin of Cytoplasmic Incompatibility in Cardinium hertigii
2012
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer
2012 Standout
Ten years of pan-genome analyses
2014
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
The Cancer Genome Atlas Pan-Cancer analysis project
2013 Standout
BioGRID: a general repository for interaction datasets
2005 Standout
Colorectal cancer
2013 Standout
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
2015 Standout
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
eggNOG v4.0: nested orthology inference across 3686 organisms
2013
Local and systemic mechanisms linking periodontal disease and inflammatory comorbidities
2021 Standout
The Heat Shock Response: Life on the Verge of Death
2010 Standout
Role of the Microbiota in Immunity and Inflammation
2014 Standout
Role of the gut microbiota in immunity and inflammatory disease
2013 Standout
NOD1 and NOD2 signalling links ER stress with inflammation
2016 StandoutNature
A Cell-Penetrating Scorpion Toxin Enables Mode-Specific Modulation of TRPA1 and Pain
2019 StandoutNobel
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
Microbial interactions: from networks to models
2012 Standout
Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface
2015 StandoutNobel
DIMA 3.0: Domain Interaction Map
2010
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
2011 Standout
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer
2012
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
2011
Microbial degradation of aromatic compounds — from one strategy to four
2011
Gene3D: merging structure and function for a Thousand genomes
2009
The gut microbiota — masters of host development and physiology
2013 Standout
Inflammation-induced cancer: crosstalk between tumours, immune cells and microorganisms
2013 Standout
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
2014 Standout
Fusobacterium nucleatum Promotes Chemoresistance to Colorectal Cancer by Modulating Autophagy
2017 Standout
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
amoA ‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
2011
The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems
2012
The prognostic landscape of genes and infiltrating immune cells across human cancers
2015 Standout
O-GlcNAc modification of small heat shock proteins enhances their anti-amyloid chaperone activity
2021 StandoutNobel
Highlighting new phylogenetic specificities of Crohnʼs disease microbiota
2010
The microbial nitrogen-cycling network
2018 Standout
Enrichment and Genome Sequence of the Group I.1a Ammonia-Oxidizing Archaeon “Ca. Nitrosotenuis uzonensis” Representing a Clade Globally Distributed in Thermal Habitats
2013
The human microbiome: at the interface of health and disease
2012 Standout
SIMAP—the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage
2013
Proceedings of the international workshop on Ribosomal RNA technology, April 7–9, 2008, Bremen, Germany
2008
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
2013
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
2010 Standout
Beyond fossil fuel–driven nitrogen transformations
2018 StandoutScienceNobel
Chemicals from lignin: an interplay of lignocellulose fractionation, depolymerisation, and upgrading
2018 Standout
FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
2014
Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea
2012
Physiology and Diversity of Ammonia-Oxidizing Archaea
2012
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Methane emission and dynamics of methanotrophic and methanogenic communities in a flooded rice field ecosystem
2014
Structure, variation, and assembly of the root-associated microbiomes of rice
2015 Standout
Imaging bacterial peptidoglycan with near-infrared fluorogenic azide probes
2014 StandoutNobel
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases
2014
Chlamydiaeinteraction with the endoplasmic reticulum: contact, function and consequences
2015
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
2018 Standout
Nitrososphaera viennensis , an ammonia oxidizing archaeon from soil
2011
Soil bacteria and archaea found in long-term corn (Zea maysL.) agroecosystems in Quebec, Canada
2013
Life in the “Plastisphere”: Microbial Communities on Plastic Marine Debris
2013 Standout
Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea
2012
Independent evolution of the core domain and its flanking sequences in small heat shock proteins
2010
VFDB 2019: a comparative pathogenomic platform with an interactive web interface
2018
Evolution Stings: The Origin and Diversification of Scorpion Toxin Peptide Scaffolds
2013
Works of Patrick Tischler being referenced
The Genome of the Amoeba Symbiont “ Candidatus Amoebophilus asiaticus” Reveals Common Mechanisms for Host Cell Interaction among Amoeba-Associated Bacteria
2009
Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron‐reducing enrichment culture
2010
PEDANT covers all complete RefSeq genomes
2008
Unity in Variety--The Pan-Genome of the Chlamydiae
2011
Sequence-Based Prediction of Type III Secreted Proteins
2009
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
2010
SIMAP structuring the network of protein similarities
2007
SIMAP—The similarity matrix of proteins
2005
SIMAP—a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
2009
probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificity
2008
B2G-FAR, a species-centered GO annotation repository
2011
Combined Genomic and Proteomic Approaches Identify Gene Clusters Involved in Anaerobic 2-Methylnaphthalene Degradation in the Sulfate-Reducing Enrichment Culture N47
2009