Citation Impact
Citing Papers
Active learning increases student performance in science, engineering, and mathematics
2014 Standout
PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management system
2007
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
2015 Standout
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
2015 Standout
PHIDIAS: a pathogen-host interaction data integration and analysis system
2007
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs
2010 Standout
SMPDB: The Small Molecule Pathway Database
2009
Network pharmacology: the next paradigm in drug discovery
2008 Standout
DrugBank 4.0: shedding new light on drug metabolism
2013 Standout
STITCH: interaction networks of chemicals and proteins
2007
The outcomes of pathway database computations depend on pathway ontology
2006
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
2013 Standout
Radiomics: the process and the challenges
2012 Standout
SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database
2013
Computational Prediction of Protein–Protein Interactions
2007
High-throughput electronic biology: mining information for drug discovery
2007
Creating and Curating a Terminology for Radiology: Ontology Modeling and Analysis
2007
Pathway Analysis: State of the Art
2015
WikiPathways: Pathway Editing for the People
2008
PARP-1 enhances the mismatch-dependence of 5′-directed excision in human mismatch repair in vitro
2011 StandoutNobel
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
MetaboAnalyst 3.0—making metabolomics more meaningful
2015 Standout
STRING 8--a global view on proteins and their functional interactions in 630 organisms
2008 Standout
Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
2011 Standout
Metabolomics, modelling and machine learning in systems biology – towards an understanding of the languages of cells
2006
Using MetaboAnalyst 3.0 for Comprehensive Metabolomics Data Analysis
2016 Standout
Ontology learning algorithm for similarity measuring and ontology mapping using linear programming
2017 Standout
Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants
2010
The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments
2009 Standout
Performance-based ontology matching
2015
Mice carrying a human GLUD2 gene recapitulate aspects of human transcriptome and metabolome development
2016 StandoutNobel
Toward a Literature-Driven Definition of Big Data in Healthcare
2015 Standout
PBL and Computer Programming — The Seven Steps Method with Adaptations
2005
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
2018 Standout
Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis
2019 Standout
Increasing the Robustness and Validity of RNAi Screens
2007
DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)
2022 Standout
Works of Patrick Lambrix being referenced
A review of standards for data exchange within systems biology
2007
Representing, storing and accessing molecular interaction data: a review of models and tools
2006
Workshop on laboratory protocol standards for the molecular methods database
2012
SAMBO—A system for aligning and merging biomedical ontologies
2006
Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX
2005
Computer science as an integrated part of engineering education
1998
Evaluation of ontology development tools for bioinformatics
2003