Citation Impact
Citing Papers
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
A hybrid approach for indexing and searching protein structures
2009
MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C α only models, Alternative alignments, and Non-sequential alignments
2013
Fast and accurate protein structure search with Foldseek
2023 Standout
2023 Standout
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
Top 10 plant pathogenic bacteria in molecular plant pathology
2012 Standout
Geometry‐based flexible and symmetric protein docking
2005
3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
2008
Adaptation of a fast Fourier transform‐based docking algorithm for protein design
2005
Open Babel: An open chemical toolbox
2011 Standout
EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps
2007
Uses of Antimicrobials in Plant Agriculture
2002
Matt: Local Flexibility Aids Protein Multiple Structure Alignment
2008
Antibiotics in the aquatic environment – A review – Part I
2009 Standout
Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement
2015 StandoutNobel
Quorum sensing signal–response systems in Gram-negative bacteria
2016 Standout
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
2017 Standout
High-Resolution Comparative Modeling with RosettaCM
2013 StandoutNobel
ZINCPharmer: pharmacophore search of the ZINC database
2012
Antibacterial resistance worldwide: causes, challenges and responses
2004 Standout
A structure-based computational workflow to predict liability and binding modes of small molecules to hERG
2020 StandoutNobel
Mechanism of tetracycline resistance by ribosomal protection protein Tet(O)
2013 StandoutNobel
Structures of Human Exonuclease 1 DNA Complexes Suggest a Unified Mechanism for Nuclease Family
2011 StandoutNobel
Déjà Vu All Over Again
2004
Tertiary Motifs Revealed in Analyses of Higher-Order RNA Junctions
2009
The IRF family, revisited
2007
Protein–Protein Docking with Backbone Flexibility
2007 StandoutNobel
Remodelling the extracellular matrix in development and disease
2014 Standout
TheClavibacter michiganensisSubspecies: Molecular Investigation of Gram-Positive Bacterial Plant Pathogens
2011
PatchDock and SymmDock: servers for rigid and symmetric docking
2005 Standout
Antibiotic resistance in the environment
2021 Standout
Matrikines and the lungs
2012
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Assessment of fold recognition predictions in CASP6
2005
Call of the wild: antibiotic resistance genes in natural environments
2010 Standout
Algorithms, Applications, and Challenges of Protein Structure Alignment
2014
Consistent refinement of submitted models at CASP using a knowledge‐based potential
2010 StandoutNobel
The DSF Family of Cell–Cell Signals: An Expanding Class of Bacterial Virulence Regulators
2015
wwLigCSRre: a 3D ligand-based server for hit identification and optimization
2009
Computer Aided Drug Design: Success and Limitations
2016
De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy
2015 StandoutNobel
EMatch: an efficient method for aligning atomic resolution subunits into intermediate-resolution cryo-EM maps of large macromolecular assemblies
2006
Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH
2022 StandoutNobel
Chimeragenesis of distantly‐related proteins by noncontiguous recombination
2012 StandoutNobel
Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution
2007 StandoutNobel
Modeling nucleic acids
2012 StandoutNobel
A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations
2018 StandoutNobel
On the Universe of Protein Folds
2013 StandoutNobel
Precise assembly of complex beta sheet topologies from de novo designed building blocks
2015 StandoutNobel
Prediction of the structure of symmetrical protein assemblies
2007 StandoutNobel
Antibiotic Resistance in Plant-Pathogenic Bacteria
2018
ANTIBIOTIC USE IN PLANT AGRICULTURE
2002
Pore-forming activity and structural autoinhibition of the gasdermin family
2016 StandoutNature
Molecular Docking and Structure-Based Drug Design Strategies
2015 Standout
Antibiotic use on crops in low and middle-income countries based on recommendations made by agricultural advisors
2020
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
Interferons and viruses: an interplay between induction, signalling, antiviral responses and virus countermeasures
2007 Standout
Ensemble of keyword extraction methods and classifiers in text classification
2016 Standout
Comparative Protein Structure Modeling Using MODELLER
2014
Clustering to identify RNA conformations constrained by secondary structure
2011 StandoutNobel
Modeling and design by hierarchical natural moves
2012 StandoutNobel
Structure similarity measure with penalty for close non-equivalent residues
2009 StandoutNobel
Comparative Protein Structure Modeling Using MODELLER
2016 Standout
Molecular Docking: Shifting Paradigms in Drug Discovery
2019 Standout
Accurate protein structure modeling using sparse NMR data and homologous structure information
2012 StandoutNobel
Automatic structure prediction of oligomeric assemblies using Robetta in CASP12
2017 StandoutNobel
Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1
2021 StandoutNobel
Comparative Protein Structure Modeling Using MODELLER
2007 Standout
Consequences of domain insertion on sequence-structure divergence in a superfold
2013
Comparative Protein Structure Modeling Using MODELLER
2016
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
2019 StandoutNobel
INTEGRATED APPROACHES FOR DETECTION OF PLANT PATHOGENIC BACTERIA AND DIAGNOSIS OF BACTERIAL DISEASES
2004
ZINC 15 – Ligand Discovery for Everyone
2015 Standout
Comparative Protein Structure Modeling Using Modeller
2006 Standout
A Robust Deep-Learning-Based Detector for Real-Time Tomato Plant Diseases and Pests Recognition
2017 Standout
MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures
2010 StandoutNobel
Works of Orit Dror being referenced
MASS: multiple structural alignment by secondary structures
2003
BioInfo3D: a suite of tools for structural bioinformatics
2004
The ARTS web server for aligning RNA tertiary structures
2006
Sequential Expression of Bacterial Virulence and Plant Defense Genes During Infection of Tomato with Clavibacter michiganensis subsp. michiganensis
2010
Molecular diagnostic procedures for production of pathogen‐free propagation material
2002
PharmaGist: a webserver for ligand-based pharmacophore detection
2008
STREPTOMYCIN RESISTANCE OF ERWINIA AMYLOVORA IN ISRAEL AND OCCURRENCE OF FIRE BLIGHT IN PEAR ORCHARDS IN THE AUTUMN
1999
Virulence and in planta movement of X anthomonas hortorum pv. pelargonii are affected by the diffusible signal factor ( DSF )‐dependent quorum sensing system
2014
Distribution of streptomycin-resistant strainsof Erwinia amylovora in Israel and occurrence of blossom blight in the autumn
1998
Erwinia amylovora populations resistant to oxolinic acid in Israel: prevalence, persistence and fitness
2005