Citation Impact
Citing Papers
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
2019 Standout
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
2021 Standout
Prokka: rapid prokaryotic genome annotation
2014 Standout
NCBI BLAST+ integrated into Galaxy
2015
A cohort of Caenorhabditis species lacking the highly conserved let-7 microRNA
2021 Nobel
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
2012 Standout
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
2015 Standout
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
2020
Emergence of Epidemic Multidrug-Resistant Enterococcus faecium from Animal and Commensal Strains
2013
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Stretch-activated ion channels identified in the touch-sensitive structures of carnivorous Droseraceae plants
2021 StandoutNobel
Critical contribution of 3′ non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA
2022 StandoutNobel
Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar
2022
OrthoFinder: phylogenetic orthology inference for comparative genomics
2019 Standout
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Computational methods for predicting genomic islands in microbial genomes
2016
Methanogenic archaea: ecologically relevant differences in energy conservation
2008 Standout
GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures
2013
Detecting genomic islands using bioinformatics approaches
2010
WebAUGUSTUS--a web service for training AUGUSTUS and predicting genes in eukaryotes
2013
The automatic annotation of bacterial genomes
2012
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
2011 Standout
BUSCO: Assessing Genome Assembly and Annotation Completeness
2019
Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine
2009 Standout
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
2010
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
2017
Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms
2014
Aminoglycoside Resistance
2016 Standout
NCBI prokaryotic genome annotation pipeline
2016 Standout
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining
2023 Standout
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
2011
Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis
2016
Modulation of theeps-ome transcription of bifidobacteria through simulation of human intestinal environment
2016
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
The human skin microbiome
2018 Standout
Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium
2014
Simultaneous gene finding in multiple genomes
2016
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
2017 Standout
GSDS 2.0: an upgraded gene feature visualization server
2014 Standout
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
2010
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity
2016
Quality Assessment of Domesticated Animal Genome Assemblies
2015
The genome ofClostridium kluyveri, a strict anaerobe with unique metabolic features
2008
Insights from genomes of representatives of the human gut commensal B ifidobacterium bifidum
2014
Learning from class-imbalanced data: Review of methods and applications
2016 Standout
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
2018 Standout
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
2011 Standout
Exploring Vertical Transmission of Bifidobacteria from Mother to Child
2015
Antimicrobial Resistance in ESKAPE Pathogens
2020 Standout
Insights into the Environmental Resistance Gene Pool from the Genome Sequence of the Multidrug-Resistant Environmental Isolate Escherichia coli SMS-3-5
2008
Works of Oliver Keller being referenced
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
2008
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
2006
Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio
2011
WebScipio: An online tool for the determination of gene structures using protein sequences
2008
A novel hybrid gene prediction method employing protein multiple sequence alignments
2011