Citation Impact
Citing Papers
Degradation of microRNAs by a Family of Exoribonucleases in Arabidopsis
2008 Science
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
Widespread Translational Inhibition by Plant miRNAs and siRNAs
2008 Science
Insights into the Maize Pan-Genome and Pan-Transcriptome
2014
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
Natural selection interacts with recombination to shape the evolution of hybrid genomes
2018 Science
Plants send small RNAs in extracellular vesicles to fungal pathogen to silence virulence genes
2018 StandoutScience
Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
2013 StandoutScience
PIEZO ion channel is required for root mechanotransduction in Arabidopsis thaliana
2021 StandoutNobel
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Expanded functions for a family of plant intracellular immune receptors beyond specific recognition of pathogen effectors
2011
The differential expression patterns of paralogs in response to stresses indicate expression and sequence divergences
2020
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
2011 Standout
The genetic basis of flowering responses to seasonal cues
2012
The perfect storm of tiny RNAs
2008 StandoutNobel
Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits
2007
Rewiring of the Fruit Metabolome in Tomato Breeding
2018 Standout
Whole-genome sequencing of multiple Arabidopsis thaliana populations
2011
A new eye on NLR proteins: focused on clarity or diffused by complexity?
2012
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
2010 Standout
DNA recognition by an RNA-guided bacterial Argonaute
2017 StandoutNobel
Population genetics of genomics-based crop improvement methods
2011
Evolutionary Dynamics of Human Toll-Like Receptors and Their Different Contributions to Host Defense
2009
Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome
2008
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
The Decapping Scavenger Enzyme DCS-1 Controls MicroRNA Levels in Caenorhabditis elegans
2013 StandoutNobel
Origins and Mechanisms of miRNAs and siRNAs
2009 Standout
Revisiting the principles of microRNA target recognition and mode of action
2009
RRS1 and RPS4 provide a dual Resistance‐gene system against fungal and bacterial pathogens
2009
Ensembl Genomes: Extending Ensembl across the taxonomic space
2009
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
2011 Standout
Computational analysis of miRNA targets in plants: current status and challenges
2010
Speciation through sensory drive in cichlid fish
2008 StandoutNature
Recombination and linkage disequilibrium in Arabidopsis thaliana
2007
Presence–Absence Variation in A. thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints
2013
rQuant.web: a tool for RNA-Seq-based transcript quantitation
2010
Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12
2011
Genomics of the origin and evolution of Citrus
2018 StandoutNature
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
Genome variation discovery with high-throughput sequencing data
2010
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
2010 Standout
Ancestral polyploidy in seed plants and angiosperms
2011 StandoutNature
The pangenome of an agronomically important crop plant Brassica oleracea
2016 Standout
Origin, Biogenesis, and Activity of Plant MicroRNAs
2009 Standout
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Mechanism of Photosignaling by Drosophila Cryptochrome
2013 StandoutNobel
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
A framework for variation discovery and genotyping using next-generation DNA sequencing data
2011 Standout
Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation
2009
Fast and flexible simulation of DNA sequence data
2008
Direct mutation analysis by high-throughput sequencing: From germline to low-abundant, somatic variants
2011
microRNAs as oncogenes and tumor suppressors
2006 Standout
Fast gapped-read alignment with Bowtie 2
2012 Standout
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
2010 Standout
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
2012 StandoutNatureNobel
The Hallmarks of Aging
2013 Standout
The Pfam protein families database
2011 Standout
A survey of sequence alignment algorithms for next-generation sequencing
2010
Whole genome sequencing for quantifying germline mutation frequency in humans and model species: Cautious optimism
2011
Exploring plant biodiversity: the Physcomitrella genome and beyond
2008
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
2013 Standout
A SNP discovery method to assess variant allele probability from next-generation resequencing data
2009
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
2010 Standout
Next-generation genetics in plants
2008 Nature
The Cryptochrome Blue Light Receptors
2010
Methods to Study Splicing from High-Throughput RNA Sequencing Data
2014
Sequencing technologies — the next generation
2009 Standout
Genetic structure and domestication history of the grape
2011 Standout
From Guard to Decoy: A New Model for Perception of Plant Pathogen Effectors
2008
Complex regulation of the TIR1/AFB family of auxin receptors
2009
Development of Genetic and Genomic Research Resources for Brachypodium distachyon, a New Model System for Grass Crop Research
2008
Pivoting the Plant Immune System from Dissection to Deployment
2013 StandoutScience
A First-Generation Haplotype Map of Maize
2009 Science
Unfurling Fern Biology in the Genomics Age
2010
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
2009
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
Actin, a Central Player in Cell Shape and Movement
2009 StandoutScience
Rate, molecular spectrum, and consequences of human mutation
2010
New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis
2014
Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli
2008
Metabolomics for Functional Genomics, Systems Biology, and Biotechnology
2009
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
2018 StandoutScienceNobel
Application of genomics to grapevine improvement
2009
Worldwide emergence of resistance to antifungal drugs challenges human health and food security
2018 StandoutScience
Bacillus cereus AR156 primes induced systemic resistance by suppressing miR825/825* and activating defense‐related genes in Arabidopsis
2015
A link between LEAFY and B‐gene homologues in Welwitschia mirabilis sheds light on ancestral mechanisms prefiguring floral development
2017
Cancer Genome Landscapes
2013 StandoutScience
Tools for mapping high-throughput sequencing data
2012
Towards plant pangenomics
2015
The physiology of plant responses to drought
2020 StandoutScience
Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design
2009
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Analysis of Intraspecies Diversity in Wheat and Barley Genomes Identifies Breakpoints of Ancient Haplotypes and Provides Insight into the Structure of Diploid and Hexaploid Triticeae Gene Pools
2008
Indexing Graphs for Path Queries with Applications in Genome Research
2014
Seventy Million Years of Concerted Evolution of a Homoeologous Chromosome Pair, in Parallel, in Major Poaceae Lineages
2011
Botrytis small RNA Bc-siR37 suppresses plant defense genes by cross-kingdom RNAi
2017
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
Works of Norman Warthmann being referenced
The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
2009 Science
Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis
2006
A Promiscuous Intermediate Underlies the Evolution of LEAFY DNA Binding Specificity
2014 Science
Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
2007 Science
Sequence and Expression Differences Underlie Functional Specialization of Arabidopsis MicroRNAs miR159 and miR319
2007
Simultaneous alignment of short reads against multiple genomes
2009
The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana
2006
Highly Specific Gene Silencing by Artificial miRNAs in Rice
2008
Autoimmune Response as a Mechanism for a Dobzhansky-Muller-Type Incompatibility Syndrome in Plants
2007
Export of FT Protein from Phloem Companion Cells Is Sufficient for Floral Induction in Arabidopsis
2007
Comparative Analysis of the MIR319a MicroRNA Locus in Arabidopsis and Related Brassicaceae
2008
Sequencing of natural strains of Arabidopsis thaliana with short reads
2008
Local-Scale Patterns of Genetic Variability, Outcrossing, and Spatial Structure in Natural Stands of Arabidopsis thaliana
2010
Reference-guided assembly of four diverse Arabidopsis thaliana genomes
2011