Citation Impact
Citing Papers
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
2012 StandoutScienceNobel
Atomic-Level Characterization of the Structural Dynamics of Proteins
2010 StandoutScienceNobel
Stability of Proteins Small Globular Proteins
1979 Standout
Three-dimensional structure of rabbit liver [Cd7]metallothionein-2a in aqueous solution determined by nuclear magnetic resonance
1988 StandoutNobel
Experimental and Theoretical Aspects of Protein Folding
1975 Nobel
Macromolecular TLS Refinement in REFMAC at Moderate Resolutions
2003
Modeling structurally variable regions in homologous proteins with rosetta
2004 StandoutNobel
Matching theory and experiment in protein folding
1999 StandoutNobel
Demonstration by NMR of folding domains in lysozyme
1991 StandoutNatureNobel
Combinatorial peptide libraries in drug design: lessons from venomous cone snails
1995
Funnels, pathways, and the energy landscape of protein folding: A synthesis
1995 Standout
Estimating the number of protein folds and families from complete genome data 1 1Edited by J. Thornton
2000
Synapsins I and II Are ATP-binding Proteins with Differential Ca2+ Regulation
1998 StandoutNobel
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
A hierarchical approach to all‐atom protein loop prediction
2004 Standout
NMR structure of the mouse prion protein domain PrP(121–231)
1996 StandoutNatureNobel
Distance geometry and related methods for protein structure determination from NMR data
1987
Selective spider toxins reveal a role for the Nav1.1 channel in mechanical pain
2016 StandoutNatureNobel
Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM
2004
Monte Carlo simulations of biomolecules: The MC module in CHARMM
2005
Essential dynamics of proteins
1993 Standout
New structure — novel fold?
1997
The number of protein folds and their distribution over families in nature
2003
MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004 Standout
What recent ribosome structures have revealed about the mechanism of translation
2009 StandoutNatureNobel
Determination of Three-Dimensional Structures of Proteins and Nucleic Acids in Solution by Nuclear Magnetic Resonance Spectroscop
1989
Protein superfamilles and domain superfolds
1994 Nature
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Pathways for protein folding: is a new view needed?
1998
NMR sequential assignment of Escherichia coli thioredoxin utilizing random fractional deuteriation
1988
Modeling of loops in protein structures
2000 Standout
A heteromeric Texas coral snake toxin targets acid-sensing ion channels to produce pain
2011 StandoutNatureNobel
A perspective on biological catalysis
1996
An algorithm for determining the conformation of polypeptide segments in proteins by systematic search
1986
Efficient anisotropic refinement of macromolecular structures using FFT
1999
Protein folding in the landscape perspective: Chevron plots and non-arrhenius kinetics
1998
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Searching protein structure databases has come of age
1994
Structure of the E. coli protein-conducting channel bound to a translating ribosome
2005 StandoutNatureNobel
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
2011 StandoutNatureNobel
Super-resolution biomolecular crystallography with low-resolution data
2010 StandoutNatureNobel
Protein–Protein Docking with Backbone Flexibility
2007 StandoutNobel
Synapsin I is structurally similar to ATP-utilizing enzymes
1998
The Origin of Consistent Protein Structure Refinement from Structural Averaging
2015 StandoutNobel
Determination of the complete three-dimensional structure of the α-amylase inhibitor tendamistat in aqueous solution by nuclear magnetic resonance and distance geometry
1988 StandoutNobel
Conformations of immunoglobulin hypervariable regions
1989 StandoutNatureNobel
1.4 .ANG. Structure of Photoactive Yellow Protein, a Cytosolic Photoreceptor: Unusual Fold, Active Site, and Chromophore
1995
The energy landscape theory of protein folding: Insights into folding mechanisms and scenarios
2000
Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds
2006
De novo design of a fluorescence-activating β-barrel
2018 StandoutNatureNobel
Effective energy function for proteins in solution
1999
Specific Nucleus as the Transition State for Protein Folding: Evidence from the Lattice Model
1994
Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA
1991 StandoutNobel
Estimating the number of protein folds
1998
Determining stereo-specific 1H nuclear magnetic resonance assignments from distance geometry calculations
1988
Synapsin III, a Novel Synapsin with an Unusual Regulation by Ca2+
1998 StandoutNobel
Dynamics of biochemical and biophysical reactions: insight from computer simulations
2001 StandoutNobel
Structure of the zinc-binding domain of an essential component of the hepatitis C virus replicase
2005 StandoutNatureNobel
Deuterium labelling in NMR structural analysis of larger proteins
1990
Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites
1997
Kinetics of the polymer collapse transition: The role of hydrodynamics
2005
Determination of the three-dimensional structure of theAntennapedia homeodomain fromDrosophila in solution by1H nuclear magnetic resonance spectroscopy
1990
Structure and dynamics of the M3 muscarinic acetylcholine receptor
2012 StandoutNatureNobel
Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data
1998
A surprising simplicity to protein folding
2000 StandoutNatureNobel
Protein structures in solution by nuclear magnetic resonance and distance geometry
1987 StandoutNobel
Structure of antibody hypervariable loops reproduced by a conformational search algorithm
1988 Nature
An Efficient Algorithm to Perform Local Concerted Movements of a Chain Molecule
2015
Variable-Target-Function and Build-up Procedures for the Calculation of Protein Conformation. Application to Bovine Pancreatic Trypsin Inhibitor Using Limited Simulated Nuclear Magnetic Resonance Data
1988
ModBase, a database of annotated comparative protein structure models, and associated resources
2010
On the potential of normal-mode analysis for solving difficult molecular-replacement problems
2004
Protein folding dynamics: The diffusion‐collision model and experimental data
1994
Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria
2001 StandoutNatureNobel
Structure determination of the Antp(C39 → S) homeodomain from nuclear magnetic resonance data in solution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA
1991 StandoutNobel
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1997 Standout
Collective protein dynamics in relation to function
2000
Accurate Structural Correlations from Maximum Likelihood Superpositions
2008
Structure Comparison and Structure Patterns
2000
Real-space refinement of the structure of hen egg-white lysozyme
1974
Protein structure determination in solution by NMR spectroscopy.
1990 StandoutNobel
NMR solution spatial structure of ‘short’ scorpion insectotoxin I5A
1984
Growth of novel protein structural data
2007 StandoutNobel
Dynamic model of globular protein conformations based on NMR studies in solution
1978 StandoutNatureNobel
Constrained dynamics of flexible molecules
1980
The structural and energetic basis for high selectivity in a high-affinity protein-protein interaction
2010 StandoutNobel
Discovering Mountain Passes via Torchlight: Methods for the Definition of Reaction Coordinates and Pathways in Complex Macromolecular Reactions
2013
Dynamical Contributions to Enzyme Catalysis: Critical Tests of A Popular Hypothesis
2006 StandoutNobel
Flexible vs rigid constraints in statistical mechanics
1979
Protein Structure Determination in Solution by Nuclear Magnetic Resonance Spectroscopy
1989 StandoutScienceNobel
A novel approach to calculation of conformation: Distance geometry
1977
Non-Hamiltonian molecular dynamics: Generalizing Hamiltonian phase space principles to non-Hamiltonian systems
2001
Computer Simulation of Liquids
2017 Standout
Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance
1983 StandoutNobel
Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra
1982 StandoutNobel
Sequential individual resonance assignments in the 1H‐NMR spectra of polypeptides and proteins
1983 StandoutNobel
A comparison of techniques for calculating protein essential dynamics
1997
Crystal structure of a translation termination complex formed with release factor RF2
2008
High resolution nuclear magnetic resonance studies of the conformation and orientation of melittin bound to a lipid-water interface
1982 StandoutNobel
Toward High-Resolution de Novo Structure Prediction for Small Proteins
2005 StandoutScienceNobel
Structure of apamin in solution: a two-dimensional nuclear magnetic resonance study
1983
Solution conformation of proteinase inhibitor IIA from bull seminal plasma by 1H nuclear magnetic resonance and distance geometry
1985 StandoutNobel
Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis
1996
The First Experimental Test of the Hypothesis that Enzymes Have Evolved To Enhance Hydrogen Tunneling
2003
Restrained energy refinement with two different algorithms and force fields of the structure of the α‐amylase inhibitor tendamistat determined by nmr in solution
1990 StandoutNobel
The ellipsoid algorithm as a method for the determination of polypeptide conformations from experimental distance constraints and energy minimization
1987 StandoutNobel
Subtle Monte Carlo Updates in Dense Molecular Systems
2011
Prediction of the folding of short polypeptide segments by uniform conformational sampling
1987
A theoretical search for folding/unfolding nuclei in three-dimensional protein structures
1999
Rapid calculation of first and second derivatives of conformational energy with respect to dihedral angles for proteins general recurrent equations
1984
Protein normal-mode dynamics: Trypsin inhibitor, crambin, ribonuclease and lysozyme
1985 StandoutNobel
Crystal Structure of the Aequorea victoria Green Fluorescent Protein
1996 StandoutScienceNobel
The theory and practice of distance geometry
1983
Protein conformation and proton nuclear‐magnetic‐resonance chemical shifts
1983 StandoutNobel
Experimental studies of protein folding and unfolding
1979
Protein folding
1977
Nuclear Overhauser effect and cross-relaxation rate determinations of dihedral and transannular interproton distances in the decapeptide tyrocidine A
1980
NMR Determination of Residual Structure in a Urea-Denatured Protein, the 434-Repressor
1992 StandoutScienceNobel
Electronic Structure of the Neutral Tyrosine Radical in Frozen Solution. Selective 2H-, 13C-, and 17O-Isotope Labeling and EPR Spectroscopy at 9 and 35 GHz
1997
Predicting slow structural transitions in macromolecular systems: Conformational flooding
1995
Protein Hydration in Aqueous Solution
1991 StandoutScienceNobel
Brownian dynamics study of a polymer chain of linked rigid bodies
1979
An evaluation of the combined use of nuclear magnetic resonance and distance geometry for the determination of protein conformations in solution
1985 StandoutNobel
Estimating the total number of protein folds
1999
A concerted rotation algorithm for atomistic Monte Carlo simulation of polymer melts and glasses
1993
Principal-components analysis of shape fluctuations of single DNA molecules
2007 StandoutNobel
The hinge-bending mode in lysozyme
1976 Nature
Multiscale natural moves refine macromolecules using single-particle electron microscopy projection images
2012 StandoutNobel
Partial NH2- and cooh-terminal sequence analyses of Eco RI DNA restriction and modification enzymes.
1981 StandoutNobel
Conformation of glucagon in a lipid-water interphase by 1H nuclear magnetic resonance
1983 StandoutNobel
Ligand Binding: Molecular Mechanics Calculation of the Streptavidin-Biotin Rupture Force
1996 Science
The development of nuclear magnetic resonance spectroscopy as a technique for protein structure determination
1989
Dynamics of folded proteins
1977 StandoutNature
Calibration of the angular dependence of the amide proton-Cα proton coupling constants, 3JHNα, in a globular protein
1984 StandoutNobel
Protein Structure Prediction and Structural Genomics
2001 StandoutScienceNobel
A distance geometry program for determining the structures of small proteins and other macromolecules from nuclear magnetic resonance measurements of intramolecular H-H proximities in solution
1984 StandoutNobel
Mapping the Protein Universe
1996 Science
Secondary structure in the solution conformation of the proteinase inhibitor IIA from bull seminal plasma by nuclear magnetic resonance
1984 StandoutNobel
Synthetic Water-Oxidation Catalysts for Artificial Photosynthetic Water Oxidation
1997
Protein Structures and Optimal Folding from a Geometrical Variational Principle
1999
A density-matrix model of photosynthetic electron transfer with microscopically estimated vibrational relaxation times
2003 StandoutNobel
Calculation of protein conformations by proton-proton distance constraints
1985
The theory and practice of distance geometry
1983
Toward an outline of the topography of a realistic protein-folding funnel.
1995
Sequential resonance assignments as a basis for determination of spatial protein structures by high resolution proton nuclear magnetic resonance
1982 StandoutNobel
Monte Carlo Backbone Sampling for Nucleic Acids Using Concerted Rotations Including Variable Bond Angles
2004
Secondary structure of the lac repressor DNA-binding domain by two-dimensional 1H nuclear magnetic resonance in solution.
1983 StandoutNobel
Protein Radicals in Enzyme Catalysis
1998 Standout
The Internal Dynamics of Globular Protein
1981
The program FANTOM for energy refinement of polypeptides and proteins using a Newton – Raphson minimizer in torsion angle space
1990 StandoutNobel
Monte Carlo backbone sampling for polypeptides with variable bond angles and dihedral angles using concerted rotations and a Gaussian bias
2003
Fast Parallel Algorithms for Short-Range Molecular Dynamics
1995 Standout
Studies by 1H nuclear magnetic resonance and distance geometry of the solution conformation of the α-amylase inhibitor Tendamistat
1986 StandoutNobel
Interactive program for investigation of protein structures based on 1H NMR experiments
1985 StandoutNobel
Dynamics of a small globular protein in terms of low-frequency vibrational modes.
1983
Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra
1982 StandoutNobel
End-Bridging Monte Carlo: A Fast Algorithm for Atomistic Simulation of Condensed Phases of Long Polymer Chains
1999
Assignment of the 1H nuclear magnetic resonance spectrum of the trypsin inhibitor E from Dendroaspis polylepis polylepis
1982 StandoutNobel
The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models
2008
Polypeptide secondary structure determination by nuclear magnetic resonance observation of short proton-proton distances
1984 StandoutNobel
Conformational energy studies of linear dipeptides H‐X‐L ‐Pro‐OH
1979 StandoutNobel
Works of Nobuhiro Gō being referenced
Electrostatic Potential of Nucleotide-free Protein is Sufficient for Discrimination Between Adenine and Guanine-specific Binding Sites
2004
Normal mode analysis of human lysozyme: Study of the relative motion of the two domains and characterization of the harmonic motion
1990
Biological meaning, statistical significance, and classification of local spatial similarities in nonhomologous proteins
1994
Normal mode refinement: Crystallographic refinement of protein dynamic structure
1992
Molecular dynamics simulation shows large volume fluctuations of proteins
2000
Comparison of spatial arrangements of secondary structural elements in proteins
1995
Comparison of normal mode analyses on a small globular protein in dihedral angle space and Cartesian coordinate space
1994
Normal mode refinement: Crystallographic refinement of protein dynamic structure
1992
A theorem on amplitudes of thermal atomic fluctuations in large molecules assuming specific conformations calculated by normal mode analysis
1990
Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins
1996
Structural motif of phosphate-binding site common to various protein superfamilies: all-against-all structural comparison of protein–mononucleotide complexes
1999
Solution conformation of conotoxin GI determined by proton nuclear magnetic resonance spectroscopy and distance geometry calculations
1989
Energy landscape of a native protein: Jumping-among-minima model
1998
Investigating protein dynamics in collective coordinate space
1999
Effect of Solvent on Collective Motions in Globular Protein
1993
Deoxymyoglobin studied by the conformational normal mode analysis
1990
Tertiary Structure of Mouse Epidermal Growth Factor Determined by Two-Dimensional 1H NMR
1988
Common spatial arrangements of backbone fragments in homologous and non-homologous proteins
1992
Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis
1994
Calculation of the Conformation of cyclo-Hexaglycyl. 2. Application of a Monte-Carlo Method
1978
Molecular Theory of the Helix-Coil Transition in Polyamino Acids. II. Numerical Evaluation of s and σ for Polyglycine and Poly-l -alanine in the Absence (for s and σ) and Presence (for σ) of Solvent
1970
The effects of solvent on the conformation and the collective motions of protein: Normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum
1991
Thermodynamics of small-amplitude conformational fluctuations in native globular proteins.
1980
Melting-profile analysis of thermal stability of thermolysin. A formulation of temperature-scanning kinetics
1979
Protein folding as a stochastic process
1983
Noninteracting local‐structure model of folding and unfolding transition in globular proteins. I. Formulation
1981
New Method for Calculating the Conformational Entropy of a Regular Helix
1974
On the Use of Classical Statistical Mechanics in the Treatment of Polymer Chain Conformation
1976
Algorithm for rapid calculation of Hessian of conformational energy function of proteins by supercomputer
1987
Collective Variable Description of Native Protein Dynamics
1995
A Model for the Helix-Coil Transition in Specific-Sequence Copolymers of Amino Acids
1971
Calculation of the Conformation of the Pentapeptide Cyclo(glycylglycylglycylprolylprolyl). II. Statistical Weights
1970
A Method of Rapid Calculation of a Second Derivative Matrix of Conformational Energy for Large Molecules
1983
A Collective Motion Description of the 310-/.alpha.-Helix Transition: Implications for a Natural Reaction Coordinate
1994
Molecular Theory of the Helix–Coil Transition in Polyamino Acids. III. Evaluation and Analysis of s and σ for Polyglycine and Poly-l -alanine in Water
1971
THEORY OF REVERSIBLE DENATURATION OF GLOBULAR PROTEINS
1975
Structure of melittin bound to perdeuterated dodecylphosphocholine micelles as studied by two-dimensional NMR and distance geometry calculations
1989
Formulation of Static and Dynamic Conformational Energy Analysis of Biopolymer Systems Consisting of Two or More Molecules
1984
Analysis of the Contribution of Internal Vibrations to the Statistical Weights of Equilibrium Conformations of Macromolecules
1969
Ring Closure and Local Conformational Deformations of Chain Molecules
1970
Reorganization Energy of Protein Electron Transfer Reaction: Study with Structural and Frequency Signature
2000
Collective variable description of small-amplitude conformational fluctuations in a globular protein
1982 Nature
Studies on protein folding, unfolding, and fluctuations by computer simulation. II. A. Three‐dimensional lattice model of lysozyme
1978
Conformations and CD curves of cyclo(L‐ or D‐Phe‐L‐Pro‐Aca): cyclized models for specific types of β‐bends
1984
THEORY OF LARGE‐AMPLITUDE CONFORMATIONAL FLUCTUATIONS IN NATIVE GLOBULAR PROTEINS. Independent Fluctuating Site Model
1976
Protein Electron Transfer Reorganization Energy Spectrum from Normal Mode Analysis. 1. Theory
1998
Fluctuations of an α‐helix
1976
Shape of the conformational energy surface near the global minimum and low‐frequency vibrations in the native conformation of globular proteins
1978
Combined use of proton-proton overhauser enhancements and a distance geometry algorithm for determination of polypeptide conformations. Application to micelle-bound glucagon
1981 StandoutNobel
Ring Closure in Chain Molecules with Cn,I, and S2n Symmetry
1973
Refinement of X-ray data on proteins. I. Adjustment of atomic coordinates to conform to a specified geometry
1972
STUDIES ON PROTEIN FOLDING, UNFOLDING AND FLUCTUATIONS BY COMPUTER SIMULATION
1975
Use of a Symmetry Condition to Compute the Conformation of Gramicidin S
1975
BREATHING MODE OF CONFORMATIONAL FLUCTUATIONS IN GLOBULAR PROTEINS
1975
Noninteracting local‐structure model of folding and unfolding transition in globular proteins. II. Application to two‐dimensional lattice proteins
1981
Dynamics of Native Globular Proteins in Terms of Dihedral Angles
1983
Effects of solvent on the conformation and the collective motions of a protein. 2. Structure of hydration in melittin
1993