Citation Impact
Citing Papers
Advances in the diagnosis and treatment of Clostridium difficile infections
2018
Translocation of a gut pathobiont drives autoimmunity in mice and humans
2018 Science
MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
2018
A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
2020 Standout
An enzymatic toolkit for selective proteolysis, detection, and visualization of mucin-domain glycoproteins
2020 StandoutNobel
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
2019 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Formation of propionate and butyrate by the human colonic microbiota
2016 Standout
An insider's perspective: Bacteroides as a window into the microbiome
2017
Metagenomic reconstructions of gut microbial metabolism in weanling pigs
2019
Improved metagenomic analysis with Kraken 2
2019 Standout
The gut mycobiome of the Human Microbiome Project healthy cohort
2017 Standout
Precision medicine in the era of artificial intelligence: implications in chronic disease management
2020
ColabFold: making protein folding accessible to all
2022 Standout
Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity
2020
Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov.
2017
Emerging concepts in intestinal immune control of obesity-related metabolic disease
2021
Quinones are growth factors for the human gut microbiota
2017
Microbiota in health and diseases
2022 Standout
The International Scientific Association of Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of postbiotics
2021 Standout
Candida auris: A rapidly emerging cause of hospital-acquired multidrug-resistant fungal infections globally
2017
Early life colonization of the human gut: microbes matter everywhere
2018
Evidence of genotypic diversity among Candida auris isolates by multilocus sequence typing, matrix-assisted laser desorption ionization time-of-flight mass spectrometry and amplified fragment length polymorphism
2015
Gut microbiota functions: metabolism of nutrients and other food components
2017 Standout
Benchmarking Metagenomics Tools for Taxonomic Classification
2019
Massive expansion of human gut bacteriophage diversity
2021
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019
The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of synbiotics
2020 Standout
Antibiotic resistance: a rundown of a global crisis
2018 Standout
The Mouse Gut Microbial Biobank expands the coverage of cultured bacteria
2020
Bacteria loaded with glucose polymer and photosensitive ICG silicon-nanoparticles for glioblastoma photothermal immunotherapy
2022
‘Lactobacillus timonensis’ sp. nov., a new bacterial species isolated from the human gut
2017
Forgotten fungi—the gut mycobiome in human health and disease
2017
Structure-guided mutagenesis of a mucin-selective metalloprotease from Akkermansia muciniphila alters substrate preferences
2022 StandoutNobel
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
The Science of Antibiotic Discovery
2020 Standout
Gut microbiome and health: mechanistic insights
2022 Standout
Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates
2019
Performing Skin Microbiome Research: A Method to the Madness
2017
Revealing the human mucinome
2022 StandoutNobel
First report of Candida auris in America: Clinical and microbiological aspects of 18 episodes of candidemia
2016
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Maternal Fecal Microbiota Transplantation in Cesarean-Born Infants Rapidly Restores Normal Gut Microbial Development: A Proof-of-Concept Study
2020
Reconstruction of intestinal microecology of type 2 diabetes by fecal microbiota transplantation: Why and how
2021
The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication
2020 Standout
Gut microbiota: Implications in Parkinson's disease
2017
Skin microbiota–host interactions
2018 Nature
Current understanding of the human microbiome
2018 Standout
Draft genome of a commonly misdiagnosed multidrug resistant pathogen Candida auris
2015
Targeted isolation and cultivation of uncultivated bacteria by reverse genomics
2019
Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses
2016 Standout
Revolutionizing healthcare: the role of artificial intelligence in clinical practice
2023 Standout
Microbial strain-level population structure and genetic diversity from metagenomes
2017
Gut microbiome and liver diseases
2016
Ulcerative colitis
2020 Standout
Short Chain Fatty Acids (SCFAs)-Mediated Gut Epithelial and Immune Regulation and Its Relevance for Inflammatory Bowel Diseases
2019 Standout
Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids
2019
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
First hospital outbreak of the globally emerging Candida auris in a European hospital
2016
Inflammation in obesity, diabetes, and related disorders
2022 Standout
Gut microbiota in human metabolic health and disease
2020 Standout
The human skin microbiome
2018 Standout
Protein structure predictions to atomic accuracy with AlphaFold
2022 StandoutNobel
Human gut microbiome: hopes, threats and promises
2018
Pfam: The protein families database in 2021
2020 Standout
Citrus polymethoxyflavones attenuate metabolic syndrome by regulating gut microbiome and amino acid metabolism
2020 Standout
What is the Healthy Gut Microbiota Composition? A Changing Ecosystem across Age, Environment, Diet, and Diseases
2019 Standout
Soil quality – A critical review
2018 Standout
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
Gut Microbiota is Altered in Patients with Alzheimer’s Disease
2018 Standout
Mucins and the Microbiome
2020
Regulatory T Cells and Human Disease
2020 StandoutNobel
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
Global and Multi-National Prevalence of Fungal Diseases—Estimate Precision
2017 Standout
Lysosomal cathepsin D mediates endogenous mucin glycodomain catabolism in mammals
2022 StandoutNobel
Introduction to the human gut microbiota
2017 Standout
Effect of Impaired T Cell Receptor Signaling on the Gut Microbiota in a Mouse Model of Systemic Autoimmunity
2021 StandoutNobel
Present and Future of Culturing Bacteria
2017
Gut Microbiota and Host Metabolism: From Proof of Concept to Therapeutic Intervention
2021
Edge Artificial Intelligence for 6G: Vision, Enabling Technologies, and Applications
2021 Standout
Advances in Understanding the Human Urinary Microbiome and Its Potential Role in Urinary Tract Infection
2020
Worldwide emergence of resistance to antifungal drugs challenges human health and food security
2018 StandoutScience
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
MGnify: the microbiome analysis resource in 2020
2019
Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi
2018
Determinants of IBD Heritability: Genes, Bugs, and More
2018
Precision Nutrition and the Microbiome, Part I: Current State of the Science
2019
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
Metabarcoding: A powerful tool to investigate microbial communities and shape future plant protection strategies
2017
Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes
2018
Translating Immunology into Therapeutic Concepts for Inflammatory Bowel Disease
2018
The oral microbiota: dynamic communities and host interactions
2018 Standout
Photothermal Nanomaterials: A Powerful Light-to-Heat Converter
2023 Standout
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Works of Nitin Kumar being referenced
A human gut bacterial genome and culture collection for improved metagenomic analyses
2019
Lymphoid-Tissue-Resident Commensal Bacteria Promote Members of the IL-10 Cytokine Family to Establish Mutualism
2016
Culturing of female bladder bacteria reveals an interconnected urogenital microbiota
2018
Gut-educated IgA plasma cells defend the meningeal venous sinuses
2020 Nature
Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
2016 Nature
DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome
2017
Whole genome sequencing of emerging multidrug resistant Candida auris isolates in India demonstrates low genetic variation
2016
Genome-Based Infection Tracking Reveals Dynamics ofClostridium difficileTransmission and Disease Recurrence
2015
Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
2019 Nature
Draft Genome Sequence of a Fluconazole-Resistant Candida auris Strain from a Candidemia Patient in India
2015