Citation Impact
Citing Papers
Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes
2006
Discovery and revision of Arabidopsis genes by proteogenomics
2008
RepeatModeler2 for automated genomic discovery of transposable element families
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Increasing homogeneity in global food supplies and the implications for food security
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Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
2004
The use of mRNA display to select high-affinity protein-binding peptides
2001 StandoutNobel
Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
2013 StandoutScience
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes
2006
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
2002
Ten things you should know about transposable elements
2018
Discovery of chemically induced mutations in rice by TILLING
2007
Identifying sequence features that drive ribosomal association for lncRNA
2018
De novo identification of LTR retrotransposons in eukaryotic genomes
2007
Structural Insights into the Evolution of a Non-Biological Protein: Importance of Surface Residues in Protein Fold Optimization
2007 StandoutNobel
Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation
2007
The diversity of LTR retrotransposons.
2004
Fine mapping of autophagy-related proteins during autophagosome formation in Saccharomyces cerevisiae
2013 StandoutNobel
Empirical comparison of ab initio repeat finding programs
2008
SIFT web server: predicting effects of amino acid substitutions on proteins
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Rewiring of the Fruit Metabolome in Tomato Breeding
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A Family of Human MicroRNA Genes from Miniature Inverted-Repeat Transposable Elements
2007
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
2008
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
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Computational Enzyme Design
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MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
2010
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
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Tracing the Evolution of the Floral Homeotic B- and C-Function Genes through Genome Synteny
2010
An Expanded Set of Amino Acid Analogs for the Ribosomal Translation of Unnatural Peptides
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Inhibition of shoot branching by new terpenoid plant hormones
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Life without GAG: The BARE-2 retrotransposon as a parasite's parasite
2006
The Molecular Genetics of Crop Domestication
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Abundance, distribution and dynamics of retrotransposable elements and transposons: similarities and differences
2005
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
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Molecular and functional diversity of maize
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SNP discovery via 454 transcriptome sequencing
2007
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
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A novel form of resistance in rice to the angiosperm parasite Striga hermonthica
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Variability, Recombination, and Mosaic Evolution of the Barley BARE-1 Retrotransposon
2005
Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets
2008
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
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Structure and evolution of cereal genomes
2003
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
2002
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
2005
LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model
2005
Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced
2003
Catalytic antibodies
1998
Display of heterologous proteins on the surface of microorganisms: From the screening of combinatorial libraries to live recombinant vaccines
1997
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
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Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats
2009
Origin, Biogenesis, and Activity of Plant MicroRNAs
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Elicitin genes in Phytophthora infestans are clustered and interspersed with various transposon-like elements
2005
Proteomic Profiling of Autophagosome Cargo in Saccharomyces cerevisiae
2014 StandoutNobel
TET enzymes, TDG and the dynamics of DNA demethylation
2013 StandoutNature
Dual coding of siRNAs and miRNAs by plant transposable elements
2008
Thermodynamically Stable Aggregation-Resistant Antibody Domains through Directed Evolution
2008 StandoutNobel
A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes
2006 Standout
Unexpected Diversity and Differential Success of DNA Transposons in Four Species of Entamoeba Protozoans
2005
Constructing high complexity synthetic libraries of long ORFs using In Vitro selection
2000 StandoutNobel
Genomics of gene banks: A case study in rice
2012
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
3D structural information as a guide to protein engineering using genetic selection
1997
Tomato fruit weight 11.3 maps close to fasciated on the bottom of chromosome 11
2011
RNA-Seq: a revolutionary tool for transcriptomics
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Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses
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The genomic ecosystem of transposable elements in maize
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Transposable elements, gene creation and genome rearrangement in flowering plants
2005
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
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Merlin, a New Superfamily of DNA Transposons Identified in Diverse Animal Genomes and Related to Bacterial IS1016 Insertion Sequences
2004
Selective Autophagy Regulates Insertional Mutagenesis by the Ty1 Retrotransposon in Saccharomyces cerevisiae
2011 StandoutNobel
Selection for improved protein stability by phage display 1 1Edited by J. A. Wells
1999
Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice
2004
Epigenetic Natural Variation in Arabidopsis thaliana
2007
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
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Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation
2005
Phytozome: a comparative platform for green plant genomics
2011 Standout
Antibacterial drug discovery in the resistance era
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The repetitive landscape of the chicken genome
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Considering Transposable Element Diversification in De Novo Annotation Approaches
2011
Gene regulation by long non-coding RNAs and its biological functions
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Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms
2011
A call for benchmarking transposable element annotation methods
2015
Plant genome organisation and diversity: the year of the junk!
2006
A unified classification system for eukaryotic transposable elements
2007 Standout
The map-based sequence of the rice genome
2005 StandoutNature
Construction and characterization of two BAC libraries fromBrachypodium distachyon, a new model for grass genomics
2006
Genetic structure and domestication history of the grape
2011 Standout
Development of Genetic and Genomic Research Resources for Brachypodium distachyon, a New Model System for Grass Crop Research
2008
Helitrons , the Eukaryotic Rolling-circle Transposable Elements
2015
Role of Small RNAs in Host-Microbe Interactions
2010
RNA-peptide fusions for the in vitro selection of peptides and proteins
1997 StandoutNobel
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Large Retrotransposon Derivatives: Abundant, Conserved but Nonautonomous Retroelements of Barley and Related Genomes
2004
A cytochrome P450 regulates a domestication trait in cultivated tomato
2013
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2006
The repetitive landscape of the chicken genome
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Distribution, diversity, evolution, and survival of Helitrons in the maize genome
2009
Active Transposition in Genomes
2012
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
Design by Directed Evolution
1998 StandoutNobel
Computational Approaches and Tools Used in Identification of Dispersed Repetitive DNA Sequences
2008
Evaluation of Target Preparation Methods for Single‐Feature Polymorphism Detection in Large Complex Plant Genomes
2007
Enzymatic construction of highly strained carbocycles
2018 StandoutScienceNobel
Genome‐guided investigation of plant natural product biosynthesis
2015
DNA Transposons and the Evolution of Eukaryotic Genomes
2007
Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume
2016
In Vitro Selection of Functional Nucleic Acids
1999 StandoutNobel
Undergraduate research experiences: Impacts and opportunities
2015 StandoutScience
The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria
2014
Sequence composition and genome organization of maize
2004
Structure-based discovery and description of plant and animal Helitrons
2009
Gene movement by Helitron transposons contributes to the haplotype variability of maize
2005
In vitroselection and evolution of functional proteins by using ribosome display
1997
Asymmetric Enzymatic Synthesis of Allylic Amines: A Sigmatropic Rearrangement Strategy
2016 StandoutNobel
Structural Dynamics of Eukaryotic Chromosome Evolution
2003 StandoutScience
Transposing from the Laboratory to the Classroom to Generate Authentic Research Experiences for Undergraduates
2012
Active DNA Demethylation Mediated by DNA Glycosylases
2009
Genome-Wide Analysis of mariner-Like Transposable Elements in Rice Reveals Complex Relationships With Stowaway Miniature Inverted Repeat Transposable Elements (MITEs)
2003
Works of Ning Jiang being referenced
A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit
2008 Science
P instability factor: An active maize transposon system associated with the amplification of Tourist -like MITEs and a new superfamily of transposases
2001
Plant transposable elements: where genetics meets genomics
2002
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
2019
Selection of Linkers for a Catalytic Single-chain Antibody Using Phage Display Technology
1996
An active DNA transposon family in rice
2003 Nature
Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery
2002
Pack-MULE transposable elements mediate gene evolution in plants
2004 Nature
An SNP Resource for Rice Genetics and Breeding Based on SubspeciesIndicaandJaponicaGenome Alignments
2004
Methods for evaluating gene expression from Affymetrix microarray datasets
2008
Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
2004
Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation
2016
Molecular and Genetic Analyses of Four Nonfunctional S Haplotype Variants Derived from a Common Ancestral S Haplotype Identified in Sour Cherry (Prunus cerasus L.)
2009
Insertion Preference of Maize and Rice Miniature Inverted Repeat Transposable Elements as Revealed by the Analysis of Nested Elements
2001
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
2017
The Transposable Element Landscape of the Model LegumeLotus japonicus
2006
Dynamic Evolution ofOryzaGenomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set
2008
The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile
2009
An Antibody-Catalyzed Selenoxide Elimination
1997
DashengandRIRE2. A Nonautonomous Long Terminal Repeat Element and Its Putative Autonomous Partner in the Rice Genome
2002
Pack- Mutator –like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition
2011
PIF- andPong-Like Transposable Elements: Distribution, Evolution and Relationship WithTourist-Like Miniature Inverted-Repeat Transposable Elements
2004
Assessing genome assembly quality using the LTR Assembly Index (LAI)
2018
Heteroresistance at the Single-Cell Level: Adapting to Antibiotic Stress through a Population-Based Strategy and Growth-Controlled Interphenotypic Coordination
2014
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
2013
Dasheng: A Recently Amplified Nonautonomous Long Terminal Repeat Element That Is a Major Component of Pericentromeric Regions in Rice
2002
Insertion Preference of Maize and Rice Miniature Inverted Repeat Transposable Elements as Revealed by the Analysis of Nested Elements [W]
2001
PIF- and Pong-Like Transposable Elements: Distribution, Evolution and Relationship With Tourist-Like Miniature Inverted-Repeat Transposable Elements
2004