Citation Impact
Citing Papers
Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation
2004 StandoutNobel
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
Rapid protein fold determination using unassigned NMR data
2003 StandoutNobel
Thermodynamic prediction of protein neutrality
2005 StandoutNobel
High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding
2017 StandoutNobel
RNA-Guided Human Genome Engineering via Cas9
2013 StandoutScience
Detailed map of a cis-regulatory input function
2003
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
Protein stability promotes evolvability
2006 StandoutNobel
Rational evolutionary design: The theory of in vitro protein evolution
2001
Finding regulatory elements and regulatory motifs: a general probabilistic framework
2007
A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm
2008
dCas9 fusion to computer-designed PRC2 inhibitor reveals functional TATA box in distal promoter region
2022 StandoutNobel
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Translational Cross Talk in Gene Networks
2013
The embryo as a laboratory: quantifying transcription in Drosophila
2014
Molecular clock in neutral protein evolution
2004
Dynamic personalities of proteins
2007 StandoutNature
The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection
2007 StandoutNobel
The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks
2003
A single molecule view of gene expression
2009
From DNA sequence to transcriptional behaviour: a quantitative approach
2009
Evolution of functionality in lattice proteins
2001
Modular and tunable biological feedback control using a de novo protein switch
2019 StandoutNatureNobel
Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity
2006
The distribution of structures in evolving protein populations
2000
Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
2004
Synthetic biology: applications come of age
2010
Network motifs: theory and experimental approaches
2007 Standout
The evolutionary landscape of functional model proteins
1999
Cross talking of network motifs in gene regulation that generates temporal pulses and spatial stripes
2005
Thoroughly sampling sequence space: Large‐scale protein design of structural ensembles
2002
A universal RNAi-based logic evaluator that operates in mammalian cells
2007
Cancer Epigenetics: From Mechanism to Therapy
2012 Standout
Identification and consequences of miRNA–target interactions — beyond repression of gene expression
2014
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
An Integrated Platform for Automated Analysis of Protein NMR Structures
2005
Principles for designing ideal protein structures
2012 StandoutNatureNobel
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Self-assembly of DNA into nanoscale three-dimensional shapes
2009 StandoutNature
Automated analysis of NMR assignments and structures for proteins
1999
Modeling the dynamics of transcriptional gene regulatory networks for animal development
2008
Topological generalizations of network motifs
2004
Understanding hierarchical protein evolution from first principles 1 1Edited by J. Thornton
2001
MicroRNAs can generate thresholds in target gene expression
2011
Structural Determinant of Protein Designability
2003
Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis
2015
Regulatory Dynamics of Synthetic Gene Networks with Positive Feedback
2006
Metazoan MicroRNAs
2018 Standout
A Biophysical Model of CRISPR/Cas9 Activity for Rational Design of Genome Editing and Gene Regulation
2016
Massively parallel determination and modeling of endonuclease substrate specificity
2014 StandoutNobel
Endogenous miRNA and Target Concentrations Determine Susceptibility to Potential ceRNA Competition
2014
Fiji: an open-source platform for biological-image analysis
2012 Standout
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Daughter-Specific Transcription Factors Regulate Cell Size Control in Budding Yeast
2009
Identifying proteins of high designability via surface‐exposure patterns
2002
Mars - robust automatic backbone assignment of proteins
2004
Experimental strategies for studying transcription factor-DNA binding specificities
2010
The designability of protein structures
2001
De novo design of bioactive protein switches
2019 StandoutNatureNobel
Simulating protein evolution in sequence and structure space
2004 StandoutNobel
EMT: 2016
2016 Standout
Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells
2005 Standout
Emerging foundations: nano-engineering and bio-microelectronics for environmental biotechnology
2004
Protein design at the interface of the pre-biotic and biotic worlds
2012
Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility
2009
Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development
2011
Regulation of a transcription factor network by Cdk1 coordinates late cell cycle gene expression
2014
Competition between Small RNAs: A Quantitative View
2012
Modelling ‘evo‐devo’ with RNA
2002
Automated structure determination from NMR spectra
2008
Global quantification of mammalian gene expression control
2011 StandoutNature
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
Environmental selection of the feed-forward loop circuit in gene-regulation networks
2005
The art of reporter proteins in science: past, present and future applications
2010
Using a Quantitative Blueprint to Reprogram the Dynamics of the Flagella Gene Network
2004
Interplay between gene expression noise and regulatory network architecture
2012
Designability of protein structures: A lattice‐model study using the Miyazawa‐Jernigan matrix
2002
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Extracellular electron transfer via microbial nanowires
2005 StandoutNature
Protein Folding Thermodynamics and Dynamics: Where Physics, Chemistry, and Biology Meet
2006
Simple yet functional phosphate-loop proteins
2018 StandoutNobel
Symmetry and designability for lattice protein models
2000
Modeling evolutionary landscapes: Mutational stability, topology, and superfunnels in sequence space
1999
Design and STM Investigation of Intramolecular Folding in Self-Assembled Monolayers on the Surface
2004 StandoutNobel
Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
2010
Functional information and the emergence of biocomplexity
2007 StandoutNobel
Designability and thermal stability of protein structures
2003
Genomes in Focus: Development and Applications of CRISPR‐Cas9 Imaging Technologies
2017 StandoutNobel
Cyclin-dependent kinases regulate lysosomal degradation of hypoxia-inducible factor 1α to promote cell-cycle progression
2014 StandoutNobel
Randomness, Structural Uniqueness, Modularity and Neutral Evolution in Sequence Space of Model Proteins
2002
Genetic Determinants and Cellular Constraints in Noisy Gene Expression
2013 Science
Roles of mutation and recombination in the evolution of protein thermodynamics
2002 StandoutNobel
Analytical Approach to the Protein Design Problem
1999
Cellular checkpoint control using programmable sequential logic
2018 Science
Network motifs in integrated cellular networks of transcription–regulation and protein–protein interaction
2004
NMR and Temperature-jump Measurements of de Novo Designed Proteins Demonstrate Rapid Folding in the Absence of Explicit Selection for Kinetics
2003
A General Mechanism for Network-Dosage Compensation in Gene Circuits
2010 StandoutScienceNobel
Structure space of model proteins: A principal component analysis
2003
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
2003 StandoutScienceNobel
Accurate Automated Protein NMR Structure Determination Using Unassigned NOESY Data
2009 StandoutNobel
Informational Complexity and Functional Activity of RNA Structures
2004 StandoutNobel
Three-dimensional functional model proteins: Structure function and evolution
2003
Structure and function of the feed-forward loop network motif
2003
On the conservative nature of intragenic recombination
2005 StandoutNobel
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
2012 StandoutNobel
A Fluorogenic Trehalose Probe for Tracking Phagocytosed Mycobacterium tuberculosis
2020 StandoutNobel
Nascent-Seq analysis of Drosophila cycling gene expression
2013 StandoutNobel
Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes
2002
Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies
2019 Science
Protein topology and stability define the space of allowed sequences
2002 StandoutNobel
Growth Factors, Matrices, and Forces Combine and Control Stem Cells
2009 StandoutScience
Automated Analysis of Protein NMR Assignments and Structures
2004
Designing Protein Energy Landscapes
2001
Robust Synthetic Circuits for Two-Dimensional Control of Gene Expression in Yeast
2016
De novo design of protein logic gates
2020 StandoutScienceNobel
Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments
2013
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
Works of Nicolas E. Buchler being referenced
Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes
2019
Molecular Titration and Ultrasensitivity in Regulatory Networks
2008
A noisy linear map underlies oscillations in cell size and gene expression in bacteria
2015 Nature
Protein Heteronuclear NMR Assignments Using Mean-Field Simulated Annealing
1997
Designing sequential transcription logic: a simple genetic circuit for conditional memory
2007
Transcriptional regulation by the numbers: models
2005
Transcriptional regulation by the numbers: applications
2005
Nonlinear protein degradation and the function of genetic circuits
2005
Universal correlation between energy gap and foldability for the random energy model and lattice proteins
1999
Evolution of networks and sequences in eukaryotic cell cycle control
2011
On schemes of combinatorial transcription logic
2003
Protein sequestration generates a flexible ultrasensitive response in a genetic network
2009
Surveying determinants of protein structure designability across different energy models and amino-acid alphabets: A consensus
2000
Effect of alphabet size and foldability requirements on protein structure designability
1999
Effect of alphabet size and foldability requirements on protein structure designability
1999