Standout Papers
Citation Impact
Citing Papers
Comprehensive analysis of long noncoding RNA expression in dorsal root ganglion reveals cell-type specificity and dysregulation after nerve injury
2018
A sex-biased imbalance between Tfr, Tph, and atypical B cells determines antibody responses in COVID-19 patients
2023 StandoutNobel
Lnc RNA ‐dependent nuclear stress bodies promote intron retention through SR protein phosphorylation
2019
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
Lack of activity of recombinant HIF prolyl hydroxylases (PHDs) on reported non-HIF substrates
2019 StandoutNobel
Computational Stabilization of a Non‐Heme Iron Enzyme Enables Efficient Evolution of New Function
2024 StandoutNobel
Gut microbiota as the key controllers of “healthy” aging of elderly people
2021
A survey of best practices for RNA-seq data analysis
2016 Standout
Control of lupus nephritis by changes of gut microbiota
2017
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
2018 Standout
Long noncoding RNAs: pivotal regulators in acute myeloid leukemia
2015
Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error
2015
Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
2014
Determining cell type abundance and expression from bulk tissues with digital cytometry
2019 Standout
Transcriptional architecture of the mammalian circadian clock
2016 Standout
RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides
2017 StandoutNobel
Inflammatory networks underlying colorectal cancer
2016
N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3′-end processing
2017
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
Mechanisms of hypoxia signalling: new implications for nephrology
2019 StandoutNobel
IL-1R and MyD88 Contribute to the Absence of a Bacterial Microbiome on the Healthy Murine Cornea
2018 StandoutNobel
Regulatory T cell adaptation in the intestine and skin
2019
SIRPA-Inhibited, Marrow-Derived Macrophages Engorge, Accumulate, and Differentiate in Antibody-Targeted Regression of Solid Tumors
2017
Hallmarks of aging: An expanding universe
2023 Standout
The specificity of long noncoding RNA expression
2015
Direct Chloroplast Sequencing: Comparison of Sequencing Platforms and Analysis Tools for Whole Chloroplast Barcoding
2014
RNA-Seq and Expression Arrays: Selection Guidelines for Genome-Wide Expression Profiling
2018
Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems
2019 StandoutNobel
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
Interaction between microbiota and immunity in health and disease
2020 Standout
Current and future perspectives of liquid biopsies in genomics-driven oncology
2018 Standout
Delivery technologies for cancer immunotherapy
2019 Standout
A comparison of tools for the simulation of genomic next-generation sequencing data
2016
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
2017
Emerging cytokine networks in colorectal cancer
2015
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
A Distinct Function of Regulatory T Cells in Tissue Protection
2015
U1 snRNP regulates cancer cell migration and invasion in vitro
2020 Standout
U1 snRNP telescripting regulates a size–function-stratified human genome
2017
Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers
2019 Standout
The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth
2023 Standout
Ulcerative colitis
2020 Standout
UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
2017
Sex differences in immune responses
2016 Standout
Architectural and Functional Commonalities between Enhancers and Promoters
2015
Reading, writing and erasing mRNA methylation
2019 Standout
Extrathymically Generated Regulatory T Cells Establish a Niche for Intestinal Border-Dwelling Bacteria and Affect Physiologic Metabolite Balance
2018
Endogenous microRNA sponges: evidence and controversy
2016 Standout
Fibroblasts as immune regulators in infection, inflammation and cancer
2021
Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression
2016 Standout
Opportunities for Treg cell therapy for the treatment of human disease
2023 StandoutNobel
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
NF-κB, inflammation, immunity and cancer: coming of age
2018 Standout
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
2016 Standout
Inflammation in obesity, diabetes, and related disorders
2022 Standout
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Human FOXP3+ Regulatory T Cell Heterogeneity and Function in Autoimmunity and Cancer
2019 StandoutNobel
Tumor-infiltrating regulatory T cells as targets of cancer immunotherapy
2023 StandoutNobel
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
Regulatory T Cells and Human Disease
2020 StandoutNobel
Long Noncoding RNA and Cancer: A New Paradigm
2017 Standout
TIMER2.0 for analysis of tumor-infiltrating immune cells
2020 Standout
Long noncoding RNAs in innate immunity
2015
Ultraviolet B–Induced Maturation of CD11b-Type Langerin− Dendritic Cells Controls the Expansion of Foxp3+ Regulatory T Cells in the Skin
2017 StandoutNobel
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
2015
Diversity, Mechanisms, and Significance of Macrophage Plasticity
2019 Standout
Molecular control of regulatory T cell development and function
2017 StandoutNobel
Neuropathic Pain: From Mechanisms to Treatment
2020 Standout
RNA-dependent RNA targeting by CRISPR-Cas9
2018 StandoutNobel
Nuclear entry and export of FIH are mediated by HIF1α and exportin1, respectively
2018 StandoutNobel
2-Oxoglutarate-Dependent Oxygenases
2018
Control of foreign Ag‐specific Ab responses by Treg and Tfr
2020 StandoutNobel
Proenkephalin+regulatory T cells expanded by ultraviolet B exposure maintain skin homeostasis with a healing function
2020 StandoutNobel
Translating Immunology into Therapeutic Concepts for Inflammatory Bowel Disease
2018
MultiQC: summarize analysis results for multiple tools and samples in a single report
2016 Standout
Temporal transcriptomics suggest that twin-peaking genes reset the clock
2015
Twelve years of SAMtools and BCFtools
2021 Standout
Works of Nicholas E. Ilott being referenced
Deconvolution of monocyte responses in inflammatory bowel disease reveals an IL-1 cytokine network that regulates IL-23 in genetic and acquired IL-10 resistance
2020
The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages
2019
A Large Polysaccharide Produced by Helicobacter hepaticus Induces an Anti-inflammatory Gene Signature in Macrophages
2017
Tuning the Transcriptional Response to Hypoxia by Inhibiting Hypoxia-inducible Factor (HIF) Prolyl and Asparaginyl Hydroxylases
2016 StandoutNobel
Epithelial-derived IL-18 regulates Th17 cell differentiation and Foxp3+ Treg cell function in the intestine
2015
Predicting long non-coding RNAs using RNA sequencing
2013
Sequencing depth and coverage: key considerations in genomic analyses
2014
Correction: Corrigendum: Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes
2015
CGAT: computational genomics analysis toolkit
2014
Foxp3+ T reg cells control psoriasiform inflammation by restraining an IFN-I–driven CD8+ T cell response
2018