Citation Impact
Citing Papers
Using network analysis to explore co-occurrence patterns in soil microbial communities
2011 Standout
The human disease network
2007 Standout
Transcriptional Regulation by Nrf2
2017 Standout
Protein oligomer modeling guided by predicted interchain contacts in CASP14
2021 StandoutNobel
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
2008 Standout
CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing
2017 StandoutNobel
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
2021 Standout
Inference and analysis of cell-cell communication using CellChat
2021 Standout
Recent advances in physical reservoir computing: A review
2019 Standout
A guide to machine learning for biologists
2021
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
2005 Standout
Network medicine: a network-based approach to human disease
2010 Standout
ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways
2021
Network thinking in ecology and evolution
2005
Multimodal biomedical AI
2022 Standout
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
2015 Standout
NicheNet: modeling intercellular communication by linking ligands to target genes
2019
Transcription Factor NRF2 as a Therapeutic Target for Chronic Diseases: A Systems Medicine Approach
2018 Standout
Artificial intelligence in drug development: present status and future prospects
2018 Standout
Learning how to live together: genomic insights into prokaryote–animal symbioses
2008 Standout
Applications of machine learning in drug discovery and development
2019 Standout
Keystone taxa as drivers of microbiome structure and functioning
2018 Standout
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
2014 Standout
In silico prediction of novel therapeutic targets using gene–disease association data
2017
Integrated analysis of global proteome, phosphoproteome and glycoproteome enables complementary interpretation of disease-related protein networks
2015
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
STRING 8--a global view on proteins and their functional interactions in 630 organisms
2008 Standout
Mapping short DNA sequencing reads and calling variants using mapping quality scores
2008 Standout
Spatially Arranged Sparse Recurrent Neural Networks for Energy Efficient Associative Memory
2019
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Glycoproteomics
2022 StandoutNobel
Structural Bioinformatics of the Interactome
2014
Link prediction in complex networks: A survey
2010 Standout
Macrophage Polarization
2016 Standout
Scale-free networks in cell biology
2005
Predicting missing links via local information
2009 Standout
JUNB Is a Key Transcriptional Modulator of Macrophage Activation
2014
Plasticity in small-sized metallic systems: Intrinsic versus extrinsic size effect
2011 Standout
Synchronization in complex networks of phase oscillators: A survey
2014 Standout
Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks
2007
Graph theory and networks in Biology
2007
Structural analyses of a hypothetical minimal metabolism
2007
Adaptive Global Sliding-Mode Control for Dynamic Systems Using Double Hidden Layer Recurrent Neural Network Structure
2019 Standout
Predicting Protein–Protein Interactions from the Molecular to the Proteome Level
2016
NRF2-ome: An Integrated Web Resource to Discover Protein Interaction and Regulatory Networks of NRF2
2013
Origin of the Vogel–Fulcher–Tammann law in glass-forming materials: the α–β bifurcation
2000
TopHat: discovering splice junctions with RNA-Seq
2009 Standout
Works of Ney Lemke being referenced
A machine learning approach for genome-wide prediction of morbid and druggable human genes based on systems-level data
2010
HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions
2012
Prediction of Druggable Proteins Using Machine Learning and Systems Biology: A Mini-Review
2015
The Development of a Universal In Silico Predictor of Protein-Protein Interactions
2013
Essentiality and damage in metabolic networks
2003
An improved interolog mapping-based computational prediction of protein–protein interactions with increased network coverage
2014
Simulating highly diluted neural networks
1994
Random walks in a closed space
1996
MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome–Host Interactions
2020
Damage, connectivity and essentiality in protein–protein interaction networks
2004