Citation Impact
Citing Papers
2016 Standout
High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
2015
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
2015 Standout
Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14
2021 StandoutNobel
Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism
2016 Standout
ColabFold: making protein folding accessible to all
2022 Standout
Kraken: ultrafast metagenomic sequence classification using exact alignments
2014 Standout
Clustering huge protein sequence sets in linear time
2018
Characterization of soil nematode communities in three cropping systems through morphological and DNA metabarcoding approaches
2018
Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls
2016 Standout
Fast and accurate protein structure search with Foldseek
2023 Standout
The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
2015
OrthoFinder: phylogenetic orthology inference for comparative genomics
2019 Standout
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
2018 Standout
Human Genetics Shape the Gut Microbiome
2014 Standout
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
2014 StandoutNature
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
Microbiome Datasets Are Compositional: And This Is Not Optional
2017 Standout
The Human Intestinal Microbiome in Health and Disease
2016 Standout
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
2017 Standout
Analysis of plant microbe interactions in the era of next generation sequencing technologies
2014
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
2013 Standout
Membrane-bound electron transport systems of an anammox bacterium: A complexome analysis
2016
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease
2016 Standout
Exploring in vitro expression and immune potency in mice using mRNA encoding the Plasmodium falciparum malaria antigen, CelTOS
2022 StandoutNobel
Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent communities in periodontitis
2016
Gut microbiome alterations in Alzheimer’s disease
2017 Standout
Mash: fast genome and metagenome distance estimation using MinHash
2016 Standout
Compareads: comparing huge metagenomic experiments
2012
Diet rapidly and reproducibly alters the human gut microbiome
2013 StandoutNature
Current understanding of the human microbiome
2018 Standout
Antibiotic resistance in the environment
2021 Standout
Sensitive protein alignments at tree-of-life scale using DIAMOND
2021 Standout
Toward Accurate and Quantitative Comparative Metagenomics
2016
Conducting a Microbiome Study
2014
Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota
2014 Standout
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
2013 Standout
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
2017 Standout
Ribosomal Database Project: data and tools for high throughput rRNA analysis
2013 Standout
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
The microbial nitrogen-cycling network
2018 Standout
The human skin microbiome
2018 Standout
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
2012
STAMP: statistical analysis of taxonomic and functional profiles
2014 Standout
Scalable metagenomic taxonomy classification using a reference genome database
2013
Temporal variability in soil microbial communities across land-use types
2013
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
2012 Standout
Pivoting the Plant Immune System from Dissection to Deployment
2013 StandoutScience
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
2015 Standout
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Early infancy microbial and metabolic alterations affect risk of childhood asthma
2015 Standout
Structure, variation, and assembly of the root-associated microbiomes of rice
2015 Standout
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
2016 Standout
Novel techniques and findings in the study of plant microbiota: Search for plant probiotics
2012
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
An updated view of the oligosaccharyltransferase complex in Plasmodium
2019
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
2017 Standout
Using metagenomics to investigate human and environmental resistomes
2017
The oral microbiota: dynamic communities and host interactions
2018 Standout
What Is the Role of Archaea in Plants? New Insights from the Vegetation of Alpine Bogs
2018
Structure and Functions of the Bacterial Microbiota of Plants
2013 Standout
Works of Narayan Desai being referenced
From genomics to metagenomics
2012
A RESTful API for Accessing Microbial Community Data for MG-RAST
2015
Unlocking the potential of metagenomics through replicated experimental design
2012
The complete genome sequence for putative H 2 ‐ and S ‐oxidizer C andidatus Sulfuricurvum sp., assembled de novo from an aquifer‐derived metagenome
2014
An experience report: porting the MG‐RAST rapid metagenomics analysis pipeline to the cloud
2011