Citation Impact
Citing Papers
Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study
2006
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
2012 StandoutScienceNobel
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Atomic-Level Characterization of the Structural Dynamics of Proteins
2010 StandoutScienceNobel
Structure of the 70 S Ribosome Complexed with mRNA and tRNA
2006 StandoutScienceNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
De novo design of picomolar SARS-CoV-2 miniprotein inhibitors
2020 StandoutScienceNobel
Stability of Proteins Small Globular Proteins
1979 Standout
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Macromolecular TLS Refinement in REFMAC at Moderate Resolutions
2003
Matching theory and experiment in protein folding
1999 StandoutNobel
Demonstration by NMR of folding domains in lysozyme
1991 StandoutNatureNobel
Funnels, pathways, and the energy landscape of protein folding: A synthesis
1995 Standout
Optimal local propensities for model proteins
1995
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection
2007 StandoutNobel
ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement
2004
Compensatory binding of an asparagine residue to the coordination-unsaturated type I Cu center in bilirubin oxidase mutants
2008
Distance geometry and related methods for protein structure determination from NMR data
1987
Intramolecular electron transfer in laccases
2011
A Novel Method for Sampling Alpha-helical Protein Backbones
2001 StandoutNobel
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
1997
Cooperative dynamics of proteins unraveled by network models
2011
Exploring conformational space with a simple lattice model for protein structure
1994 StandoutNobel
Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM
2004
Normal mode analysis of macromolecular motions in a database framework: Developing mode concentration as a useful classifying statistic
2002
Characterization of endogenous and recombinant forms of laccase-2, a multicopper oxidase from the tobacco hornworm, Manduca sexta
2009
Phenoxazinone synthase: what's in a name?
2009
Towards protein folding by global energy optimization
1993
Exploring Global Distortions of Biological Macromolecules and Assemblies from Low-resolution Structural Information and Elastic Network Theory
2002
Simplified Normal Mode Analysis of Conformational Transitions in DNA-dependent Polymerases: the Elastic Network Model
2002
Principles for designing ideal protein structures
2012 StandoutNatureNobel
The Mechanism and Pathway of pH Induced Swelling in Cowpea Chlorotic Mottle Virus
2002
Pathways for protein folding: is a new view needed?
1998
Local interactions and the optimization of protein folding
1997 StandoutNobel
Modeling of loops in protein structures
2000 Standout
Rational design of α-helical tandem repeat proteins with closed architectures
2015 StandoutNatureNobel
Protein folding in the landscape perspective: Chevron plots and non-arrhenius kinetics
1998
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Structures of Human Exonuclease 1 DNA Complexes Suggest a Unified Mechanism for Nuclease Family
2011 StandoutNobel
Role of backbone strain in de novo design of complex α/β protein structures
2021 StandoutNobel
The coming of age of de novo protein design
2016 StandoutNatureNobel
Mechanisms underlying dioxygen reduction in laccases. Structural and modelling studies focusing on proton transfer
2010
Structure of the E. coli protein-conducting channel bound to a translating ribosome
2005 StandoutNatureNobel
Maximizing RNA folding rates: A balancing act
2000
Insect multicopper oxidases: Diversity, properties, and physiological roles
2010
Super-resolution biomolecular crystallography with low-resolution data
2010 StandoutNatureNobel
Extremely rapid protein folding in the absence of intermediates
1995
The role of Asp116 in the reductive cleavage of dioxygen to water in CotA laccase: assistance during the proton-transfer mechanism
2012
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
The Structure of the Small Laccase from Streptomyces coelicolor Reveals a Link between Laccases and Nitrite Reductases
2008
Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT
2008
A protein-folding reaction under kinetic control
1992 StandoutNatureNobel
Protein folding: local structures, domains, subunits, and assemblies
1991
Crystal Structure of a Two-domain Multicopper Oxidase
2009
Building-block approach for determining low-frequency normal modes of macromolecules
2000
Laccases: Complex architectures for one-electron oxidations
2012
Contact order, transition state placement and the refolding rates of single domain proteins 1 1Edited by P. E. Wright
1998 StandoutNobel
Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon
2005 StandoutNobel
Mechanism of folding chamber closure in a group II chaperonin
2010 StandoutNatureNobel
Ceruloplasmin revisited: structural and functional roles of various metal cation-binding sites
2007
Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences
2006
Dynamical Properties of the MscL of Escherichia coli: A Normal Mode Analysis
2003
The chemical repertoire of natural ribozymes
2002 StandoutNatureNobel
Folding protein α‐carbon chains into compact forms by monte carlo methods
1992
A surprising simplicity to protein folding
2000 StandoutNatureNobel
Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold
1997
A computer model to dynamically simulate protein folding: Studies with crambin
1989
Cuticle laccase of the silkworm, Bombyx mori: Purification, gene identification and presence of its inactive precursor in the cuticle.
2009
Normal Mode Analysis Suggests a Quaternary Twist Model for the Nicotinic Receptor Gating Mechanism
2005
Solvation Effects and Driving Forces for Protein Thermodynamic and Kinetic Cooperativity: How Adequate is Native-centric Topological Modeling?
2003
The molten globule state as a clue for understanding the folding and cooperativity of globular‐protein structure
1989 Standout
Prediction of protein folding from amino acid sequence over discrete conformation spaces
1991
Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution
2007 StandoutNobel
Protein folding dynamics: The diffusion‐collision model and experimental data
1994
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
Direct-coupling analysis of residue coevolution captures native contacts across many protein families
2011
Variational Theory for Site Resolved Protein Folding Free Energy Surfaces
1998
Protein Structure Determination in Solution by Nuclear Magnetic Resonance Spectroscopy
1989 StandoutScienceNobel
Copper Active Sites in Biology
2014 Standout
Normal Modes of Prion Proteins: From Native to Infectious Particle
2011 StandoutNobel
Monte Carlo-minimization approach to the multiple-minima problem in protein folding.
1987
Toward High-Resolution de Novo Structure Prediction for Small Proteins
2005 StandoutScienceNobel
Evidence for identity between the equilibrium unfolding intermediate and a transient folding intermediate: a comparative study of the folding reactions of .alpha.-lactalbumin and lysozyme
1986
Solvophobically Driven Folding of Nonbiological Oligomers
1997 Science
Role of explicitly cooperative interactions in protein folding funnels: A simulation study
2001
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
A new approach for determining low‐frequency normal modes in macromolecules
1994
Molecular Matchmakers
1993 StandoutScienceNobel
How does a protein fold?
1994 Nature
THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective
1997 Standout
Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications.
1995
Inhibition Mechanism of the Acetylcholine Receptor by α-Neurotoxins as Revealed by Normal-Mode Dynamics
2008 StandoutNobel
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
2003 StandoutScienceNobel
Symmetry and the energy landscapes of biomolecules
1996
A Field Guide to Foldamers
2001 Standout
Bioinorganic Chemistry of Alzheimer’s Disease
2012
Exploring the origins of topological frustration: Design of a minimally frustrated model of fragment B of protein A
1999
Three-dimensional organization of three-domain copper oxidases: A review
2008
Progress in Modeling of Protein Structures and Interactions
2005 StandoutScienceNobel
Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy
2003 StandoutNobel
Reversible Optical Transcription of Supramolecular Chirality into Molecular Chirality
2004 StandoutScienceNobel
On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models
2004
Searching for foldable protein structures using optimized energy functions
1995
Protein Structure Prediction and Structural Genomics
2001 StandoutScienceNobel
Normal-Mode Analysis of the Glycine Alpha1 Receptor by Three Separate Methods
2007
RIBOSOME DYNAMICS: Insights from Atomic Structure Modeling into Cryo-Electron Microscopy Maps
2006 StandoutNobel
Diffusion control in an elementary protein folding reaction
1997
The Crystal Structure of the Signal Recognition Particle in Complex with Its Receptor
2011 StandoutScienceNobel
Consistency principle for protein design
2019
Top-down design of protein architectures with reinforcement learning
2023 StandoutScienceNobel
The Protein Folding Problem
2008
Reconfigurable asymmetric protein assemblies through implicit negative design
2022 StandoutScienceNobel
A lattice model for protein structure prediction at low resolution.
1992 StandoutNobel
Identification and ab initio simulations of early folding units in proteins
2000
Works of N. Gō being referenced
Function and molecular evolution of multicopper blue proteins
2005
Respective roles of short- and long-range interactions in protein folding.
1978
Molecular theory of the helix-coil transition in polyamino acids, I. Formulation.
1968
The consistency principle in protein structure and pathways of folding
1984
Function and molecular evolution of multicopper blue proteins
2005
Refinement of protein dynamic structure: normal mode refinement.
1990
Dynamics of a small globular protein in terms of low-frequency vibrational modes.
1983
Theoretical Studies of Protein Folding
1983