Standout Papers
Citation Impact
Citing Papers
DOMINO: development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms
2016
Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15
2017 Science
The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice
2010
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
Digitalization to achieve sustainable development goals: Steps towards a Smart Green Planet
2021 Standout
Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
2011
RNA Binding and HEPN-Nuclease Activation Are Decoupled in CRISPR-Cas13a
2018 StandoutNobel
Switchable Cas9
2017 StandoutNobel
dCas9 fusion to computer-designed PRC2 inhibitor reveals functional TATA box in distal promoter region
2022 StandoutNobel
The promise and challenge of therapeutic genome editing
2020 StandoutNatureNobel
Genome-Wide SNP Calling Using Next Generation Sequencing Data in Tomato
2014
An Expanded View of Complex Traits: From Polygenic to Omnigenic
2017 Standout
Exogenous proline mitigates the detrimental effects of salt stress more than exogenous betaine by increasing antioxidant enzyme activities
2006
Regulation of microRNA function in animals
2018 Standout
Proline: a multifunctional amino acid
2009 Standout
The Biogenesis, Functions, and Challenges of Circular RNAs
2018 Standout
Comprehensive Transcriptome Analysis of Phytohormone Biosynthesis and Signaling Genes in Microspore/Pollen and Tapetum of Rice
2008
Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins
2015
Ancestral genome duplication in rice
2004
Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions
2013 Standout
Genetic control of root development in rice, the model cereal
2010
Engineered thermostable fungal Cel6A and Cel7A cellobiohydrolases hydrolyze cellulose efficiently at elevated temperatures
2013 StandoutNobel
A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals
2012 StandoutNobel
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants
2010 Standout
RNA targeting with CRISPR–Cas13
2017 Nature
Climate-smart soils
2016 StandoutNature
Understanding Tissue-Specific Gene Regulation
2017
Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls
2009
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
2011
Auxin-related gene families in abiotic stress response in Sorghum bicolor
2010
Long Noncoding RNAs in Cancer Pathways
2016 Standout
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production
2014
RNAi suppression of lignin biosynthesis in sugarcane reduces recalcitrance for biofuel production from lignocellulosic biomass
2012
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)
2007
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type‐A response regulator of cytokinin signaling
2011
Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces
2018
Genome‐wide transcriptome dissection of the rice root system: implications for developmental and physiological functions
2011
Metazoan MicroRNAs
2018 Standout
Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice
2015 Nature
Reactive oxygen species homeostasis and signalling during drought and salinity stresses
2009 Standout
Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments
2008
IT3F: A web-based tool for functional analysis of transcription factors in plants
2008
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
Stress homeostasis – the redox and auxin perspective
2011
The antitumor toxin CD437 is a direct inhibitor of DNA polymerase α
2016
Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
2021 StandoutNobel
Common pitfalls in preclinical cancer target validation
2017 StandoutNobel
Using next‐generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences
2011 Standout
Oxidative Stress in Cancer
2020 Standout
Adeno-associated virus vector as a platform for gene therapy delivery
2019 Standout
PROTAC targeted protein degraders: the past is prologue
2022 Standout
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
2011
Applications of CRISPR technologies in research and beyond
2016 StandoutNobel
Proline and glycinebetaine enhance antioxidant defense and methylglyoxal detoxification systems and reduce NaCl-induced damage in cultured tobacco cells
2007
MYB transcription factors in Arabidopsis
2010 Standout
The biogenesis, biology and characterization of circular RNAs
2019 Standout
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
2012 Standout
Salt tolerance and salinity effects on plants: a review
2004 Standout
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
2017 Standout
Aryl Sulfonamides Degrade RBM39 and RBM23 by Recruitment to CRL4-DCAF15
2019
The CRISPR/Cas Genome-Editing Tool: Application in Improvement of Crops
2016
Alpharetroviral self-inactivating vectors produced by a superinfection-resistant stable packaging cell line allow genetic modification of primary human T lymphocytes
2016 StandoutNobel
Next-generation transcriptome assembly
2011
Active and Repressed Chromatin Domains Exhibit Distinct Nucleosome Segregation during DNA Replication
2019
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
2013
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization
2009
An Argonaute phosphorylation cycle promotes microRNA-mediated silencing
2017 Nature
The map-based sequence of the rice genome
2005 StandoutNature
Comparative lipid peroxidation, antioxidant defense systems and proline content in roots of two rice cultivars differing in salt tolerance
2004
Role of proline under changing environments
2012 Standout
Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6
2018 StandoutScience
Peptidic degron for IMiD-induced degradation of heterologous proteins
2019 StandoutNobel
Paving the Way for Lignin Valorisation: Recent Advances in Bioengineering, Biorefining and Catalysis
2016 Standout
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
2015
GSDS 2.0: an upgraded gene feature visualization server
2014 Standout
Sequencing of plant genomes – a review
2015
PUMILIO hyperactivity drives premature aging of Norad-deficient mice
2019
Accelerating genetic gains in legumes for the development of prosperous smallholder agriculture: integrating genomics, phenotyping, systems modelling and agronomy
2018
Alterations in root lipid peroxidation and antioxidative responses in two rice cultivars under NaCl-salinity stress
2007
Hemicelluloses
2010 Standout
Genome‐guided investigation of plant natural product biosynthesis
2015
Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume
2016
Multiple modes of PRC2 inhibition elicit global chromatin alterations in H3K27M pediatric glioma
2018
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data
2017
Engineering of temperature- and light-switchable Cas9 variants
2013 StandoutNobel
The CRISPR/Cas9 system and its applications in crop genome editing
2019
Targeted Mutagenesis, Precise Gene Editing, and Site-Specific Gene Insertion in Maize Using Cas9 and Guide RNA
2015
MultiQC: summarize analysis results for multiple tools and samples in a single report
2016 Standout
Abscisic Acid: Emergence of a Core Signaling Network
2010 Standout
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
The biological roles of glutaredoxins
2012
Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses
2009
Light-Induced Subunit Dissociation by a Light–Oxygen–Voltage Domain Photoreceptor from Rhodobacter sphaeroides
2012
Reactive oxygen species, abiotic stress and stress combination
2016 Standout
Biomass for a sustainable bioeconomy: An overview of world biomass production and utilization
2021 Standout
Works of Mukesh Jain being referenced
An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.)
2015
RNA-seq analysis of hippocampal tissues reveals novel candidate genes for drug refractory epilepsy in patients with MTLE-HS
2016
Next-generation sequencing technologies for gene expression profiling in plants
2011
Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa)
2005
De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification
2011
Transcriptome Analysis of Catharanthus roseus for Gene Discovery and Expression Profiling
2014
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
2012 Standout
Salt‐ and glyphosate‐induced increase in glyoxalase I activity in cell lines of groundnut (Arachis hypogaea)
2002
Transcript profiling reveals diverse roles of auxin‐responsive genes during reproductive development and abiotic stress in rice
2009
Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa)
2006
Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
2006
The CRISPR–Cas system for plant genome editing: advances and opportunities
2014
Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome
2005
Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa)
2006
Function genomics of abiotic stress tolerance in plants: a CRISPR approach
2015
Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers
2012
The auxin-responsive GH3 gene family in rice (Oryza sativa)
2005
Genome-wide analysis of intronless genes in rice and Arabidopsis
2007
A draft genome sequence of the pulse crop chickpea (C icer arietinum L.)
2013
Ameliorative effects of proline on salt stress-induced lipid peroxidation in cell lines of groundnut (Arachis hypogaea L.)
2001
Light regulation and differential tissue-specific expression of phototropin homologues from rice (Oryza sativa ssp. indica)
2006
Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice
2007
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress
2007
Agronomic Evaluation of Sugarcane Lines Transformed for Resistance to Sugarcane mosaic virus Strain E
2005