Citation Impact
Citing Papers
Anti-Markovnikov alkene oxidation by metal-oxo–mediated enzyme catalysis
2017 StandoutScienceNobel
Directed evolution of the tryptophan synthase β-subunit for stand-alone function recapitulates allosteric activation
2015 StandoutNobel
An enumerative algorithm for de novo design of proteins with diverse pocket structures
2020 StandoutNobel
Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination
2009 Science
Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water
2017 StandoutScienceNobel
Mechanisms of Viral Membrane Fusion and Its Inhibition
2001
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
Simultaneous prediction of protein folding and docking at high resolution
2009 StandoutNobel
Visualization of the movement of single histidine kinase molecules in live Caulobacter cells
2004 StandoutNobel
Natural selection interacts with recombination to shape the evolution of hybrid genomes
2018 Science
Hallucinating symmetric protein assemblies
2022 StandoutScienceNobel
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Differential expression analysis for sequence count data
2010 Standout
Fast and accurate protein structure search with Foldseek
2023 Standout
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
2012
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
2020 Standout
Atomic model of the type III secretion system needle
2012 StandoutNatureNobel
BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions
2012
Design of protein-interaction specificity gives selective bZIP-binding peptides
2009 Nature
Structure of the Type VI Secretion System Contractile Sheath
2015 StandoutNobel
The genomic landscape of Neanderthal ancestry in present-day humans
2014 StandoutNatureNobel
Multistate Protein Design Using CLEVER and CLASSY
2013
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
Progressive epitope-blocked panning of a phage library for isolation of human RSV antibodies
2002
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
Recognizing Protein-Ligand Binding Sites by Global Structural Alignment and Local Geometry Refinement
2012
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
Role of the Biomolecular Energy Gap in Protein Design, Structure, and Evolution
2012 StandoutNobel
I-TASSER server: new development for protein structure and function predictions
2015 Standout
CATH: comprehensive structural and functional annotations for genome sequences
2014
Rational design of α-helical tandem repeat proteins with closed architectures
2015 StandoutNatureNobel
The coming of age of de novo protein design
2016 StandoutNatureNobel
Rational Engineering of Enzyme Allosteric Regulation through Sequence Evolution Analysis
2012
Membrane Fusion
2003 StandoutNobel
Type IV Pilus Structure by Cryo-Electron Microscopy and Crystallography: Implications for Pilus Assembly and Functions
2006
The cytoplasmic helical linker domain of receptor histidine kinase and methyl-accepting proteins is common to many prokaryotic signalling proteins
1999
Structural specificity in coiled-coil interactions
2008
De novo design of orthogonal peptide pairs forming parallel coiled‐coil heterodimers
2010
Deriving Heterospecific Self-Assembling Protein–Protein Interactions Using a Computational Interactome Screen
2015
Design of metalloproteins and novel protein folds using variational autoencoders
2018
The Phyre2 web portal for protein modeling, prediction and analysis
2015 Standout
3DLigandSite: predicting ligand-binding sites using similar structures
2010
Methods of integrating data to uncover genotype–phenotype interactions
2015
Programmable design of orthogonal protein heterodimers
2018 StandoutNatureNobel
CasX enzymes comprise a distinct family of RNA-guided genome editors
2019 StandoutNatureNobel
Protein Engineering of Cas9 for Enhanced Function
2014
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays
2011
Structure-based Prediction of bZIP Partnering Specificity
2005
TMEM41B Is a Pan-flavivirus Host Factor
2020 StandoutNobel
Computational design of affinity and specificity at protein–protein interfaces
2009
Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments
2013
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
Hydrogels Constructed from Engineered Proteins
2015
The structural and energetic basis for high selectivity in a high-affinity protein-protein interaction
2010 StandoutNobel
De Novo Protein Design for Novel Folds Using Guided Conditional Wasserstein Generative Adversarial Networks
2020
Fast and accurate algorithms for protein side-chain packing
2006
Increasing the affinity of selective bZIP‐binding peptides through surface residue redesign
2014
A conserved trimerization motif controls the topology of short coiled coils
2005
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
2009 Standout
Computational design of water-soluble α-helical barrels
2014 Science
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Human broadly neutralizing antibodies to the envelope glycoprotein complex of hepatitis C virus
2012 StandoutNobel
De novo design of modular protein hydrogels with programmable intra- and extracellular viscoelasticity
2024 StandoutNobel
Fluorescence Lifetime Measurements and Biological Imaging
2010 Standout
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
Two-Component Signal Transduction
2000 Standout
De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures
2017 StandoutNobel
Protein–Protein Interactions Mediated by Helical Tertiary Structure Motifs
2015
Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation
2020 StandoutScience
Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
2013
Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
2011
The Coronavirus Spike Protein Is a Class I Virus Fusion Protein: Structural and Functional Characterization of the Fusion Core Complex
2003
Two-component signal transduction systems in eukaryotic microorganisms
1998
Control over overall shape and size in de novo designed proteins
2015 StandoutNobel
Protein Design of an HIV-1 Entry Inhibitor
2001 Science
Histone chaperone Spt6 is required for class switch recombination but not somatic hypermutation
2011 StandoutNobel
Structural basis for Zika envelope domain III recognition by a germline version of a recurrent neutralizing antibody
2020 StandoutNobel
Membrane Fusion Tropism and Heterotypic Functional Activities of theNipah VirusandHendra VirusEnvelope Glycoproteins
2002
Reconfigurable asymmetric protein assemblies through implicit negative design
2022 StandoutScienceNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Chemical Glycoproteomics
2016 StandoutNobel
Works of Mona Singh being referenced
Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays
2009
Type IV Pilin Structure and Assembly
2003
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure
2009
Evolution of Amino Acid Frequencies in Proteins Over Deep Time: Inferred Order of Introduction of Amino Acids into the Genetic Code
2002
LearnCoil-VMF: computational evidence for coiled-coil-like motifs in many viral membrane-fusion proteins
1999
Predicting specificity in bZIP coiled-coil protein interactions
2004
Computational learning reveals coiled coil-like motifs in histidine kinase linker domains
1998
Structural characterization of the human respiratory syncytial virus fusion protein core
2000
Characterization and prediction of residues determining protein functional specificity
2008
The trimer-of-hairpins motif in membrane fusion: Visna virus
2001
Deep sequencing of large library selections allows computational discovery of diverse sets of zinc fingers that bind common targets
2013
De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins
2013
Predicting DNA recognition by Cys2His2 zinc finger proteins
2008
DeMaSk: a deep mutational scanning substitution matrix and its use for variant impact prediction
2020
Predicting functionally important residues from sequence conservation
2007
A Semidefinite Programming Approach to Side Chain Positioning with New Rounding Strategies
2004
Solving and analyzing side-chain positioning problems using linear and integer programming
2004
Quantitative measurement of allele‐specific protein expression in a diploid yeast hybrid by LC‐MS
2012
SPICi: a fast clustering algorithm for large biological networks
2010